Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_004928.1 Length=167560 Score E Sequences producing significant alignments: (Bits) Value seq41502 114 1e-20 seq10303 84.2 2e-11 >seq41502 Length=4250 Score = 114 bits (126), Expect = 1e-20 Identities = 309/465 (66%), Gaps = 11/465 (2%) Strand=Plus/Minus Query 67961 TTTGAAAGGTTTTACCATATGGAAATTTTGTTTGAAACGTTTGACGTAATCGTCATGTCC 68020 |||||||||||| | |||||| |||| ||||||||| || || ||||| || | || Sbjct 1855 TTTGAAAGGTTTAATCATATGTTGATTTGCTTTGAAACGATTCACATAATCATCCTCACC 1796 Query 68021 TAAACTTT-GGTACATACTTACTACTTTGCTGTAGTTTTCCCAGGCATACTCACGGAACC 68079 ||||| |||||| | | |||||| | |||| | | || | |||||||||| Sbjct 1795 -AAACTCACGGTACAAAGCAATTACTTTATAGAAGTTCTGATAAGCGAATTCACGGAACC 1737 Query 68080 AACCAGAGGTGATGCTTGTACAGACTTTTTCCAATGCCATCA-TAAAACTGGCTTCAGGG 68138 ||||| || || || ||||||||||| | ||||| | || || |||| ||| Sbjct 1736 AACCACTAGTAATACTAGTACAGACTTTAGATAGAGCCATAACGAATGCTTGCTT-AGGT 1678 Query 68139 TTAATTTTAAAGTCATTAGGAATTTGAGAACGTTCTAATGCTAGTACACATGATTCTTCG 68198 | || | | || || ||| | ||||||||| ||| |||||||| | |||||| Sbjct 1677 GTTGGTTGATAATCGAACGGGATTAGGCAACGTTCTAGTGCAAGTACACAAGTCTCTTCG 1618 Query 68199 TATACACCAGCCAATTTGACCATTTCTGGTAATGATTCGAACTTCTCGCGTGAGGT--CA 68256 ||||| || |||| || || | | | |||||||| | | | | || Sbjct 1617 TATACTCCTAGTAATTGTTTAATCTCGGAAAGAGCGAAGAACTTCT--CTTTATCTACCA 1560 Query 68257 TGACTTCAGAGCCGTCTTTCATATAAAATGTATACGCTGGACGGTCTGTTAGTGCAATGG 68316 | ||||| | || |||||||| || | | ||||| || || | | ||||| | Sbjct 1559 TTACTTCCGCACCATCTTTCATGTACTCTTTGTACGCAGGTGCATCCATAATAGCAATCG 1500 Query 68317 CTTCATGAATAGTATCATGGTCATATGTATA---GATGTCATCTTTAAAGAACGCACTTT 68373 | ||||||||||||||||||||||| |||| | ||||||| ||||| | || Sbjct 1499 CCTCATGAATAGTATCATGGTCATAGATATAACCCACTTCATCTTGGAAGAAGGTTTCTT 1440 Query 68374 TAGAAGTGTCAAGAACCGGGTGAGCATAGTTCAAGGTTTCTTTCT 68418 | || ||||| || || || | || || | |||||||||| Sbjct 1439 TGGATTGATCAAGTACTGGATGGGTGTAATTATACGTTTCTTTCT 1395 >seq10303 Length=766 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/226 (69%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 142198 TAGTCCATATGTCGAATACGGTTTTCATCCACGCCTTTGTTATTTTTCAGAACTAATAGG 142257 ||||| | || |||| |||||| || ||||||||||| || || |||| ||| Sbjct 529 TAGTCACTTTGACGAACACGGTTAAATTCAGTTCCTTTGTTATTCTTTAGTACTACAAGG 588 Query 142258 TTCTCTACTTCTAAGTGCCACATTGGATAATACGCTGTAGCAGCACCACCACGAATACCA 142317 || || | ||||| ||||| | ||| | | || || ||||||||||||| ||| Sbjct 589 TTTTCAAATTCTAGATGCCATAGTGGGAAGTGAATAGTTGCTGCACCACCACGAACGCCA 648 Query 142318 CCTTGAGAACAAGATTTTACTGCAGTTT--GGAAATGTTTCCA-GAATGGAATAACACCC 142374 ||||| ||||| ||||| | |||||| | | || | | ||||||||| | ||| Sbjct 649 CCTTGTGAACATGATTTAA---CAGTTTTAGTACTTGCTGAAAGGAATGGAATCAAACCT 705 Query 142375 GTATGTCGAACTTCACCCATACCGATCTTAGAACCTTCTGCACGAA 142420 |||||| | ||||| || ||| | |||| || |||||||| Sbjct 706 GTATGTACTGCGTCACCACCACGGATTTCAGAATCTAATGCACGAA 751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535569574771200