Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2257 129 7e-25 seq44731 102 1e-16 >seq2257 Length=6083 Score = 129 bits (142), Expect = 7e-25 Identities = 215/311 (69%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 || ||||| |||||||| || | ||||| ||| || || || || ||||||| | | Sbjct 2911 TCAAACTCCTCTCCCCAGACGTCGTCCAGTCCGGGGCACTCGCGGGGGCACATCAGGGCC 2852 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257 || || |||||||| || | ||||| |||||||| |||| ||| || || | || Sbjct 2851 CAGTCGGCGTCATCCGAAACCCTCTTCATGAAGAGATCCGGAACCCAGAGGGCCAGGAAC 2792 Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63317 ||||| | || || | ||||| || || ||||| | || | |||| | | Sbjct 2791 AGATCGCGGGCCCTCTCCTCCTCAGGCCCAGTGTTCTTCCTCAGCGACACGAACTCAAAG 2732 Query 63318 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63377 ||||| | ||||| || || | ||| ||||| | |||| || || ||||| |||||| Sbjct 2731 ATATCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAGGCTCCCGGACGCTTGTTGCCTCCC 2672 Query 63378 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63437 ||||| | ||| | ||||||||| || || || | | ||| || || | ||||| || Sbjct 2671 TGATCCACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATGGGGATCAGTCCGTTCGAG 2612 Query 63438 ATACCATTGGT 63448 |||| ||||| Sbjct 2611 GTACCGTTGGT 2601 >seq44731 Length=5866 Score = 102 bits (112), Expect = 1e-16 Identities = 135/185 (73%), Gaps = 3/185 (2%) Strand=Plus/Plus Query 33340 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33399 || || |||||||| ||||| |||||||| || || ||||| || |||||||| ||| Sbjct 3427 ATGAGCTCGTTGGACTGGGTGAGCCCGGGCATAAGCCCGCGCTTCTTGAGCCAAAAGATG 3486 Query 33400 GAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCT 33459 || ||||| || || || ||||| ||||| || || || || || || || | |||||| Sbjct 3487 GAGGCGAAGGACCCGGAGAAGAATATTCCCTCGACGGCGGCGAATGCGATGACTCTCTCG 3546 Query 33460 CCATAACCGGCG-CT--GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 33516 | | ||| || ||| |||||||| | ||||| ||||||||||| || | | Sbjct 3547 GCGAAGGAGGCCTCTTCGTCGGCGATCCACTTCAGCGCCCAGTCGGCCTTCTTCTTGATA 3606 Query 33517 CAAGG 33521 ||||| Sbjct 3607 CAAGG 3611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622372640223760