Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq25958 113 3e-20 seq16039 105 4e-18 >seq25958 Length=4164 Score = 113 bits (124), Expect = 3e-20 Identities = 234/357 (66%), Gaps = 45/357 (13%) Strand=Plus/Minus Query 6171 CTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGC 6230 || ||||| || ||| ||| | ||| | |||||||||||||| ||||| | |||| Sbjct 2731 CTCAACGTGAACCGTGCTGTTACCGACCCCTTCTACCGCTACAAGATGCCCA--AACTGC 2674 Query 6231 --GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAG 6288 || || || ||||| ||||| |||||||| ||||||||||| | |||||| |||| Sbjct 2673 TGGCAAAAGTGGAGGGAAAGGGCAACGGTATCAAAACCGTCATCGCGAACATGACTGAGA 2614 Query 6289 TCGCTAAGGCGCTCGGACGCCCTGC---------------CACCT--------------- 6318 |||| ||| | |||| ||||||||| ||| | Sbjct 2613 TCGCGAAGTCTCTCGAACGCCCTGCAATGTGTAAGTACATCACATTTAGTGAACTCTATT 2554 Query 6319 -----------ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGA 6367 |||| || || || ||||| || ||||| || || ||||| | ||||| Sbjct 2553 TGTCATTTTAGACCCCACCAAGTACTTCGGCTGTGAACTGGGTGCCCAGACCAACTTTGA 2494 Query 6368 TCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTT 6427 ||||||||||| | |||||| || ||| ||| || | | |||| | || ||| | Sbjct 2493 CGCGAAAAACGAGCGTTACATCGTGAATGGAGAGCACGACGCGGTCAAGTTACAAGACAT 2434 Query 6428 ACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 || ||||| || || ||||| || || |||| || || || ||||||||||| Sbjct 2433 CCTGGACGGTTTCATAAAGAAGTTCGTTCTCTGTCCGGCTTGTGACAACCCGGAGAC 2377 >seq16039 Length=12455 Score = 105 bits (116), Expect = 4e-18 Identities = 237/362 (65%), Gaps = 48/362 (13%) Strand=Plus/Minus Query 6169 CCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGC-GCATC 6227 |||| ||||| || || ||| | ||| | ||||||||||||||||||||| || || Sbjct 11305 CCCTTAACGTGAACCGCGCTGTCACTGACCCCTTCTACCGCTACAAAATGCCGAAGCTTC 11246 Query 6228 TGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAA 6287 | || ||||||||||| ||||||||||| || || || ||| | ||||||||| | || Sbjct 11245 TT-GCTAAGGTCGAGGGAAAGGGAAACGGCATCAAGACTGTCGTCGTCAACATGGCCGAT 11187 Query 6288 GTCGCTAAGGCGCTCGGACGCCCTGCCA----------------------CCT------- 6318 | || ||||| || | ||||| ||| ||| Sbjct 11186 ATAGCCAAGGCTCTGGAGCGCCCCTCCATGTGTATGTTTTCTTCATGGAGCCTGTTATTG 11127 Query 6319 -----------ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGA 6367 |||| || || || ||||||||||| | || || ||||| | ||||| Sbjct 11126 TAATCCTTTAGACCCTACCAAGTACTTCGGGTGCGAGTTGGGTGCCCAGACCAACTTTGA 11067 Query 6368 TCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAA---GCTGCAGGA 6424 || ||||| ||||||||||| || ||| || || |||||| |||||||| Sbjct 11066 CGCTAAGAACGAACGCTTCATCGTCAATGGAGAGC---ACGATGCCAACCGTCTGCAGGA 11010 Query 6425 CTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 | | ||||| || || ||||| |||||||| | || || ||||||||||| || Sbjct 11009 TCTTTTGGACGGTTTCATCAAGAAGTTCGTGCTGTGCCCGGCTTGTGATAACCCGGAAAC 10950 Query 6485 CG 6486 || Sbjct 10949 CG 10948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334645993078166