Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2257 190 4e-43 seq44731 132 9e-26 >seq2257 Length=6083 Score = 190 bits (210), Expect = 4e-43 Identities = 201/262 (77%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 244912 GGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGG 244971 |||||| || ||| ||||| |||||||| ||||| || ||||||||| ||| || Sbjct 2924 GGTGTAGAGTTTCTCAAACTCCTCTCCCCAGACGTCGTCCAGTCCGGGGCACT-CGCGGG 2866 Query 244972 G-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCC 245030 | ||||| || ||| ||| || | ||| ||||||| ||||||||| || || | || Sbjct 2865 GGCACATCAGGGCCCAGTCGGCGTCATCCGAAACCCTCTTCATGAAGAGATCCGGAACCC 2806 Query 245031 AGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCT 245090 |||||||| |||| || || | || ||||| ||| || | |||||||||||||||||| Sbjct 2805 AGAGGGCCAGGAACAGATCGCGGGCCCTCTCCTCCTCAGGCCCAGTGTTCTTCCTCAGCG 2746 Query 245091 CCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCC 245150 || || ||||||| || ||||||||||||| | ||||| |||| ||| || || | Sbjct 2745 ACACGAACTCAAAGATATCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAGGCTCCCGGAC 2686 Query 245151 GCTTGTTGCCTCCCTGGTCCAC 245172 |||||||||||||||| ||||| Sbjct 2685 GCTTGTTGCCTCCCTGATCCAC 2664 Score = 140 bits (154), Expect = 6e-28 Identities = 296/440 (67%), Gaps = 25/440 (6%) Strand=Plus/Minus Query 244391 TCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCG 244450 ||||| || |||| |||||| |||||||| ||||| | || ||||||| | Sbjct 3590 TCGAGAGCCGCGTGGTAGATAACTTCGAAGATGCGTTTGTTGAAATCACGGGCCTCGTTT 3531 Query 244451 CAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCG 244510 ||||||||||| || ||| | ||||||| ||||||||| |||||||| || | || Sbjct 3530 GAGGTGAAGGGGTAGCGCATAAGCATGAAGGTGTCGGCCAGACCCTGCACTCCCAGACCA 3471 Query 244511 ATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCG 244570 || || | ||| ||| ||||||| || ||| || | ||||| ||||| |||| Sbjct 3470 ATAGGGCGGTGGCGCATGTTGGAACGACGGGCCTCCTCGATCGGGTAGTAGTTGATGTCG 3411 Query 244571 ATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACG--TCGGCCA-GCAGCTGAAAG 244627 || | |||||| || |||||||| || | ||| || | | | | | | | | Sbjct 3410 ATGATCTTGTTCAGATTGCGGGTTATAACCTGGAAATCGAATATTCTAAGAAAATAAGAT 3351 Query 244628 TCG---TAC----------TCGTAGGGATCCTCGG---CGA------TGGTGATCCTCAC 244665 | | ||| |||| | | | || | ||| || | | | || Sbjct 3350 TTGATCTACCTTGGTGACTTCGTGGAGTTTCTTGAAGTCGAACTTCTTGTCGTTGCCGAC 3291 Query 244666 AAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTA 244725 || ||||||||||| | ||||| |||||| ||||| ||||| || | | ||| ||| Sbjct 3290 GAAGCGGTTGAGGGCGATGGAGGCCAAGTTGCAAACGGCGACCTCATCGGGGCTGGAGTA 3231 Query 244726 CTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGA 244785 || ||| ||||| ||||| ||||| |||||||||||| ||||||| ||| || ||| Sbjct 3230 CTCGACGATCTCAGTGCACAGGTTGGAGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCT 3171 Query 244786 CTTGGCGTTGCAGGCGTCCT 244805 |||| ||||||||| |||| Sbjct 3170 CTTGCGGTTGCAGGCATCCT 3151 >seq44731 Length=5866 Score = 132 bits (146), Expect = 9e-26 Identities = 251/380 (66%), Gaps = 37/380 (10%) Strand=Plus/Minus Query 42482 GAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541 ||| || || ||| || |||||| || | ||||||||| |||||||| ||||| ||||| Sbjct 3799 GAAGGAAGTCCAGGTCTCTGAGGCCCGGTTCTTCTACGGATTCCAGATCGCCATTGAGAA 3740 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | | || |||||| ||||| ||| || || | || ||||||| || ||||| ||| | Sbjct 3739 CATCCATTCTGAGATGTACAGCAAGCTCATCGAGACCTACATCCGTGACCCCGTTGAGAG 3680 Query 42602 TAACGGG-------------------------------------CTGTTCAAGGCCATGG 42624 | || || ||||| || || Sbjct 3679 GTATGGAAAATAATTTTTTGTTATAATTTTCCCTTAGGAATCGCCTATTCAATGCGATCA 3620 Query 42625 AGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCG 42684 | | || || |||||||||||||| ||||||||||| || ||||||| | Sbjct 3619 CTGAGTTCCCTTGTATCAAGAAGAAGGCCGACTGGGCGCTGAAGTGGATCGCCGACGAAG 3560 Query 42685 ACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGG 42744 | || | |||| |||||| | | || || ||||||||||||| || |||||||| | Sbjct 3559 AGGCCTCCTTCGCCGAGAGAGTCATCGCATTCGCCGCCGTCGAGGGAATATTCTTCTCCG 3500 Query 42745 GCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCT 42804 | |||||||||||||||| ||||||||| || | | |||||||| |||||| | Sbjct 3499 GGTCCTTCGCCTCCATCTTTTGGCTCAAGAAGCGCGGGCTTATGCCCGGGCTCACCCAGT 3440 Query 42805 CGAACGAACTCATCAGCAGG 42824 | ||||| |||||| |||| Sbjct 3439 CCAACGAGCTCATCTCCAGG 3420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943468212347360