Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq17487 96.9 8e-15 seq72756 91.5 3e-13 >seq17487 Length=3481 Score = 96.9 bits (106), Expect = 8e-15 Identities = 108/143 (76%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 || ||||||||||||||||| || ||| ||| ||||| || || |||||||| || Sbjct 156 CCAGCGAAGATCAGACGCTGCTG---ATCGGGGGGAATTCCCTCCTTGTCCTGGATCTTA 212 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || || ||||| || | ||| | || || ||||| ||||| ||||| ||||| Sbjct 213 GCCTTGACATTTTCGATGGTGTCGGAGGCCTCAACCTCGAGAGTGATAGTCTTTCCGGTG 272 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 ||||| |||||||| || ||||| Sbjct 273 AGAGTTTTGACGAAGATTTGCAT 295 >seq72756 Length=1554 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || ||||||||||| ||||| ||| || ||||| || ||||||||||| || || Sbjct 190 CCGGCGAAGATCAGGCGCTGCTGATCGGGAGGAATTCCCTCCTTATCCTGGATCTTGGCC 131 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| || || || | ||| | || || ||||| || || ||||| ||||| || Sbjct 130 TTCACATTCTCGATGGTGTCGGAGGCCTCCACCTCGAGGGTAATGGTCTTTCCGGTGAGT 71 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||||||||| || ||||| Sbjct 70 GTCTTGACGAAGATTTGCAT 51 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178539174636908