Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_010106.1 Length=52975 Score E Sequences producing significant alignments: (Bits) Value seq22710 95.1 4e-15 >seq22710 Length=1561 Score = 95.1 bits (104), Expect = 4e-15 Identities = 237/354 (67%), Gaps = 12/354 (3%) Strand=Plus/Minus Query 52408 TGAGTTGAAGAAGAAGCTGTATTTATGCCTCATGTCTATCAATGCATTG--GAAGCAATT 52465 ||| ||||| ||||| || | |||||| | | ||| || |||| |||| ||| Sbjct 807 TGAATTGAAAAAGAAACTATGGTTATGCTTGAACAGTATTAA--CATTCTTGAAGGTATT 750 Query 52466 CGCTTCTATGTCAGCTTTGCTTGCTCATTTGCCTTCGCAGAACGTAAGTTAATGGAAGGA 52525 ||||||||||| ||||| || || | || |||||||| ||| |||||||||| Sbjct 749 CGCTTCTATGTTTCATTTGCATGTTCTTGGGCTTTCGCAGAGAATAAACTAATGGAAGGG 690 Query 52526 AATGCCAAGATTATTCGCTTAATTGCACGAGATGAAGCACTT-CATTTGACAGGAACTCA 52584 || || ||||| || || ||||| || || | || |||| || || ||| || || Sbjct 689 AACGCTAAGATCATCCGTCTAATTTGCCGTGACG-AGAACTTACACTTAGCAGCTACCCA 631 Query 52585 GCACATGCTGAACCTTCTTGCAAGTGGAAAAGATGACCCAGAAATGGGTGAAATTGCTGC 52644 ||||| || || |||| ||||| || |||| | | | ||||||| | Sbjct 630 AATGATGCT--ACGTTTACTCAAG----AAAGAAGATGCAGACTTTGTTAAAATTGCAGA 577 Query 52645 TGAATGCCGCCAAGAATGCCAGAAATTGTTCGAAGATGCTGCTCAACAAGAGAAGGATTG 52704 ||||||| | | ||| || || |||| |||||| || ||||| | || || Sbjct 576 AGAATGCCACGACGAAGTACAACAAATGTTTATGGATGCTATTCGCCAAGAAGAAGAGTG 517 Query 52705 GGCCGATTATTTGTTCAAAGATGGCTCTATGATTGGCTTAAACAAGCAAATTCT 52758 ||| || ||| | |||||||| || || || ||||| || ||| ||||| || Sbjct 516 GGCTGACTATCTATTCAAAGACGGTTCCATTATTGGTTTGAACGCACAAATCCT 463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169249971639684