Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_011041.1 Length=137947 Score E Sequences producing significant alignments: (Bits) Value seq33536 127 2e-24 >seq33536 Length=1950 Score = 127 bits (140), Expect = 2e-24 Identities = 910/1448 (63%), Gaps = 40/1448 (3%) Strand=Plus/Plus Query 86136 CATGTGCATGATCTTGACTACTTGATCAGTCCGTTAACAAACTGTTGTTTGGTAAATTAT 86195 ||| | ||||| || || |||| || ||||| ||||| ||||| ||||| || |||||| Sbjct 78 CATATTCATGACCTAGATTACTATATTAGTCCATTAACCAACTGCTGTTTAGTTAATTAT 137 Query 86196 CCAGATATGTTGGAAAACGGATTCAACATTGGTAACGCCCATGTCAGTAAGCCTAAGTCA 86255 ||||||||| | || || || || ||||||||||| || || || || || Sbjct 138 GAAGATATGTTAGCTAATGGTTTTAAAATTGGTAACGCACAAGTTGGTTCCCCAAATAGT 197 Query 86256 ATAGGGGTTGCAACAACAATCCTTAGCCAAATCTCTAGT-GCAGTAGCTAGTGCTCAATA 86314 || || || |||| ||||| || | ||||| || | ||||| | | ||||| Sbjct 198 ATTGGAGTGGCAAGTACAATACTAACACAAATAG-TACTAGCAGTTTCAGCATCACAATA 256 Query 86315 TGGGGGTCAGACTATGAGCCATATTGATCATTATCTGGCACAGTATGCTGAAGCGACCTA 86374 || ||||| | | || ||||||| | | ||| || |||| || |||| Sbjct 257 CGGTGGTCAATCCCTACCACACATTGATCGTGGTTTGGAACCATATGTAGAGAAATCCTA 316 Query 86375 TGAGAAGAACCTTAAATTTTGCCAGGAACATTGGTTGCCAGATGCTGAGACTGTTGCAAT 86434 | | || || | | | | | ||| | || | |||| ||||| | | Sbjct 317 TCAAAA--ACTATTACAACAACAAAAAGAATTTAATCTTAGC-GATGAGTATGTTG-AGT 372 Query 86435 GCAAATGACAGATAAAGACGTATTTGACAGCATGCAGACTTTGCTCTATCAAATCAATAC 86494 || || |||||| || | ||| ||||| | ||| | || ||| | ||||| Sbjct 373 ATTCATTACG--TAAAGAAGTTTATGATGCAATGCAAGCGTTGTTGTACCAAGTGAATAC 430 Query 86495 GTTAACTTCTGTCAACGGGCAAACTCCATTCATAACATTAAGTTTAGGACTGGATACCTC 86554 | || || || |||||||| |||||| | || | || |||||| || ||| || Sbjct 431 AATCACATCAAGTAATGGGCAAACACCATTCGTCACTATTAGCTTAGGATTGAGTACTTC 490 Query 86555 GGTCTTTGGTAGAATGATTACCAAAAACTACTTGAAAGTCCACAAAATGGGTCTTGGTGA 86614 || || | |||||||||| || |||||| | || || ||| || | || Sbjct 491 TAAGTTCGGGAAAATGATTACCGAATCATACTTGGATGTTCATGAAAAAGGATTAGGAAT 550 Query 86615 AGAACGTATCACACCTGTGTTCCCTAAAGTGCTGTTCTTCCTAGAAGAGGGTGTCAACAT 86674 ||| || ||||| || || |||||||| |||||||||| | || ||| |||| || Sbjct 551 AGACGGTGCTACACCCGTATTTCCTAAAGTTGTGTTCTTCCTTCAGGAAGGTATCAATAT 610 Query 86675 GAACCCTGGAGATCCTAACTATGATTTGAAACGATTAGCTCTGGAATGCTCTGCAGAGCG 86734 || ||| |||| |||||| ||||| |||| | ||| || |||| | || | || Sbjct 611 GAGTACTGAAGATTGTAACTACGATTTAAAACAAAAAGCACTACAATGTGCAGCTAAACG 670 Query 86735 GATTTATCCTGACTTTGTTTCTGTTCCACTAAATCGTAAAGTGAC--AGGCT-CGACAGA 86791 || ||||| ||||| ||||| || ||| |||| ||||| || || | | |||| Sbjct 671 TATATATCCCGACTTCGTTTCAGTCCCATTAAACTTGAAAGTAACCAAGAGTACTTCAGA 730 Query 86792 TGGTAAAGTAACGAGCATGGGTTGCCGGAGTTTTCTTAGCAAATACAATGACTTG--GAA 86849 | | || || ||||||||||| | ||| || | || || ||| || Sbjct 731 AGCT---GTTACTCCTATGGGTTGCCG-ATCCTTCCTATCC----CACTGGGTTGATGAG 782 Query 86850 ACAGGCGAGGAGAAATACCTTGGCAGATTTAACTTAGGCGTTGTTAGCCTTAACCTGCCA 86909 | || ||| ||| || | ||||||||||| || || || | || || ||| Sbjct 783 AATGGTTCGGAACGTTACAACGGACGCTTTAACTTAGGAGTGGTGAGTATCAATCTTCCA 842 Query 86910 ATGATTGCGGCAAAAGCTAAAACGGAAGGTGTTGATTTCTTTGCAGTTCTTGACGAGTAT 86969 || | || || | | || || || | |||||||||| | ||| || || Sbjct 843 TTGTTAGCCCTTGAATCGACCACTGACGGAG---ATTTCTTTGCTAAGGTAGACCAGCAT 899 Query 86970 CTGGATTTGGCGTATGAAGCTCACCTTGTAAGGGTTAACCGTCTAAAAGGAACAAAGGCA 87029 || | |||| ||| ||||| | | || | ||| |||| | | || || Sbjct 900 ATGCAAATGGCATATCGTGCTCAGATGAACCGTGTAGAGCGTTTAAAGAGCATGAAAGCG 959 Query 87030 GGGCAGAACCCTATCATGTGGTGTGAAGGCGCTCTTGCTCGCCTGGATCCTGAAGAGAGT 87089 ||||||||| || | | |||||| | |||||| || | || || ||| | | | Sbjct 960 AAGCAGAACCCAATTCTTTTCACTGAAGGAGTTCTTGCACGTTTAGACCCAGAAAATACT 1019 Query 87090 ATTGATAAACTCTTCTATGACGGGTACGCTTCCATCAGTATTGGGTATATTGGTGTGTAT 87149 || || | || || || || ||||| || || |||||||| | | | ||| | Sbjct 1020 ATCGAACAGCTATTTTACGATGGGTATGCAAGTATTAGTATTGGATTTGTAGGTTTAGCA 1079 Query 87150 GAAACCTGT-CAGATTTTGGGCAGGGAGGGT--GACAAGGCTTTAGCTCTTGGAATACTT 87206 ||| ||| |||| | | ||| | || || | || || | | || | Sbjct 1080 GAA---TGTTCAGAAATACTCAAAGGAAGTCTCGATAAAACGTT--CTGTAAGTCTATTC 1134 Query 87207 CAGCACATGAGAGATGCTTGTGAGC-GATACAAGAAGGAA-AGTAGACTAGCGTTTAGCT 87264 | | || || || | ||| | ||| ||| ||| |||||| || | ||||| Sbjct 1135 TATCCTATATGAAATCCAAGTGTGAAGATTTTAGAGTGAAGAGTAGATTATCCTTTAGTC 1194 Query 87265 TGTACGGCACCCCTTCTGAGAGTCTATGCTATAAAGCTGCAACCTGTCTGGATCGTGAAT 87324 | || || || || | ||||| || ||||| || |||| | | || ||| Sbjct 1195 TATATGGAACACCAGCAGAGAGCCTTTGCTACAAGTTTGCACGTTCAATTGAGAAGAAAT 1254 Query 87325 ATCCTGAAGTGTTGAAGCACGAGCATGAATATCTCACCAACAGTTTCCATCAGCCAGTAT 87384 | ||| ||| | || ||| ||| ||| |||| ||| ||||| |||||||||| Sbjct 1255 ACCCTTCAGTACTAAA--ACG----TGATTATATCACTAACTCATTCCACCAGCCAGTAT 1308 Query 87385 GGATCAATAGCTCTCCTTTTGATAAGTGGGAGTATGAGGAAGGTTTTGCTATGATCTCTT 87444 |||| | || ||||| | || || ||| | ||||| ||||||||||| | | | Sbjct 1309 GGATTGAAAGTTCTCCGCTAGAGAAATGGAATTATGAAGAAGGTTTTGCATTCTTGAGTA 1368 Query 87445 CTGGTGGCAACATCGGATACGTAGAGACACCAAATCTGAAAAACAACTTAGATGCTTTGG 87504 ||| || || || | || || || |||||||| || ||||| || || || || | Sbjct 1369 ATGGCGGGAATATTAGTTATGTTGAAACACCAAACCTTAAAAATAATATAACAGCCTTAG 1428 Query 87505 AAGCTCTTGTTGATTTCGGATATAAACACATTATGTATTTTGGTATCAACCAGCCTGTGG 87564 |||| | || |||| | |||| ||| | ||| |||||||| ||||| || || | Sbjct 1429 AAGCATTGGTCGATTATGCATATGAACGTGTACCGTACTTTGGTATTAACCAACCAGTAG 1488 Query 87565 ATAAATGT 87572 |||||||| Sbjct 1489 ATAAATGT 1496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440895375763920