Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2257 91.5 2e-13 >seq2257 Length=6083 Score = 91.5 bits (100), Expect = 2e-13 Identities = 172/248 (69%), Gaps = 9/248 (4%) Strand=Plus/Minus Query 204206 CCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTG 204265 ||||| || |||| |||| || | | |||| |||| | || || | | |||||||| Sbjct 3905 CCGGAAAGGACCCTTCGGCTGTAGATGTTGGAGGTGTAGGGCTCAATGGATTCGTTGTTT 3846 Query 204266 CCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACA 204325 |||| ||||| || || |||||| ||||| || |||||||| || ||||||||| Sbjct 3845 CCGAGGATCTGTGCAGTAGAGGCCGTCGGCATCGGTGCCAGGAGGAGACTGTTGCGCACT 3786 Query 204326 CCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCAT--CGCACTGGGTTTCA 204383 ||||| || | || | | | | |||||| ||||||| | || | |||| || Sbjct 3785 CCGTACTTCTTGATCTTCTCCCTAAGAGAGTCCCAGTCGACCTCTCCGGAGAGGGT--CA 3728 Query 204384 CGCC---CCACATGTCGAACTGAAAGA-TGCCTTGACTGACTGGGCTGCCCTTGTACGTC 204439 || |||||||||||| |||| | | ||||| ||| || ||||||| ||| ||| Sbjct 3727 CGTTGTTCCACATGTCGAATTGAAGCACTCCCTTG-GAGACGGGACTGCCCTCGTAAGTC 3669 Query 204440 GGATAAGG 204447 ||| || Sbjct 3668 TCATAGGG 3661 Score = 86.0 bits (94), Expect = 1e-11 Identities = 81/101 (80%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 203966 ATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATT 204024 ||||||||||| || ||||| ||||||||| ||||| || ||||| || ||||| | Sbjct 4230 ATGTGAATGTTGAGCGACTGAGACTGGTCGATG-AAGGCTCCGCGATCGGCAGCCATCTC 4172 Query 204025 GATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA 204065 ||| ||| ||||||||| | ||||||||| |||||| ||| Sbjct 4171 GATGATGTGCTTCTGCGACAACTCCCACACAGTCTTGTACA 4131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794421808480160