Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq44731 122 9e-23 seq17487 95.1 1e-14 seq72756 82.4 8e-11 >seq44731 Length=5866 Score = 122 bits (134), Expect = 9e-23 Identities = 140/185 (76%), Gaps = 5/185 (3%) Strand=Plus/Plus Query 132924 CCTGGAAATGAGTTCGTTG--CTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGC 132981 |||||| ||||| |||||| ||| || | |||||||| || ||||| || |||||| Sbjct 3420 CCTGGAGATGAGCTCGTTGGACTGG--GTGAGCCCGGGCATAAGCCCGCGCTTCTTGAGC 3477 Query 132982 CAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACC 133041 ||||| |||| |||||| || || ||||| | ||||||||||| ||||| || | Sbjct 3478 CAAAAGATGGAGGCGAAGGACCCGGAGAAGAATATTCCCTCGACGGCGGCGAATGCGATG 3537 Query 133042 AGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT- 133100 | | |||| |||| | ||| |||| | ||||||||| ||||||||| |||||||| Sbjct 3538 ACTCTCTCGGCGAAGGAGGCCTCTTCGTCGGCGATCCACTTCAGCGCCCAGTCGGCCTTC 3597 Query 133101 TTCTT 133105 ||||| Sbjct 3598 TTCTT 3602 >seq17487 Length=3481 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| ||||| || || || ||||| |||| || |||||| || Sbjct 295 ATGCAAATCTTCGTCAAAACTCTCACCGGAAAGACTATCACTCTCGAGGTTGAGGCCTCC 236 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | || |||| ||||| |||||||||||| |||| || Sbjct 235 GACACCATCGAAAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCCGATCAG 176 Query 38364 CAGCGGCTCATTTACGCGGG 38383 ||||| || || | ||| || Sbjct 175 CAGCGTCTGATCTTCGCTGG 156 >seq72756 Length=1554 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || ||||| ||| |||| || |||||| || Sbjct 51 ATGCAAATCTTCGTCAAGACACTCACCGGAAAGACCATTACCCTCGAGGTGGAGGCCTCC 110 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| || || ||||||||||| |||| || Sbjct 111 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCAG 170 Query 38364 CAGCGGCTCATTTACGCGGG 38383 ||||| || || | ||| || Sbjct 171 CAGCGCCTGATCTTCGCCGG 190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499711478122240