Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq679 140 4e-28 seq8648 87.8 2e-12 >seq679 Length=2491 Score = 140 bits (154), Expect = 4e-28 Identities = 414/630 (66%), Gaps = 14/630 (2%) Strand=Plus/Plus Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 |||||||| | || || || ||||||| ||| ||||| | ||| | || ||||| Sbjct 1075 TCTCGAAGAGCCTTCTCTACGGGTTCCAGTGTTTTGCGGAAGAGGTCGTTGCAGAGTTCT 1134 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 ||||| || || | ||| | || ||||||| | || ||| | | ||||| | Sbjct 1135 TCAAATCGAGCCCTGGTCACTTTGGTGGAGAAATCCAGTCCTTCGAAGATAGAATCCAGC 1194 Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369 || ||| | | || || | | | || | ||| |||| ||||| || ||||| Sbjct 1195 TCGATGATGGCTTCAGCTGAGCTACTCAGAGTCCTCTTGGCGCTTTCACAGGCAGTTCGA 1254 Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT 7429 | |||||| || || | |||||| | || || | || ||| | || ||||| Sbjct 1255 AGACGACGCAGAGCCCTCGGGTTCTCACGAAGGTCCCTTTTGGTTTTCCTTTGGAACTCG 1314 Query 7430 TCAG--AGAAG-TGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCC 7486 | | ||| | | | |||| || | | || || ||||| || || | || || || Sbjct 1315 GCTGCCAGATGCTCTTGAAGACGT-TGG--TCAAAGTCTTCTCCTCCGAGATGGGTGTCT 1371 Query 7487 CCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTA--ACAAC-GAAACATCA 7543 || || |||||||| ||||| |||| | |||||| || || | || || |||||| Sbjct 1372 CCAGCAGTCGCTTTCACTTCGAAGAGAGATCCTTCGCTGATTTGTAGAATAGAGACATCA 1431 Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGT-TCGTATCGTCGTCTTTGTTCTTATC 7602 || || || || ||||||||||| ||||| |||| ||| ||| | | ||||| || Sbjct 1432 AAGGTTCCTCCTCCCAGGTCAAAGATGAGGACGTGTCG----GTCTCCCTCCTTCTTGTC 1487 Query 7603 GAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCC 7662 || || || || | || || ||||| |||||||| || || | | |||||| || Sbjct 1488 CAGTCCATAGGCCAGGGCAGCAGCCGTCGGTTCATTGATGATCCTCACTGCGTTCAGTCC 1547 Query 7663 AGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 |||||| |||||||| || ||||| |||| || ||||| |||||||| || || Sbjct 1548 AGCAATCACGGCCGCATCCTTGGTCGCCTGTCTCTGGCTGTCGTTGAAGTAGGCAGGCAC 1607 Query 7723 CGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTT 7782 || | || ||||| | || | || || || | || || | |||||||| || Sbjct 1608 TGTGATCACGGCGTCTTTCACCGAGTGTCCCAGGTAGGTCTCGGCCGTCTCTTTCATCTT 1667 Query 7783 GGTAAGAACCATCGATGAAATCTCTTCAGC 7812 || ||||| | ||| ||||| || || Sbjct 1668 TCCGAGGACCATGGCTGAGATCTCCTCTGC 1697 >seq8648 Length=304 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 6888 TCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTT 6947 |||| | ||||| || || || ||| |||| | |||||| | ||| || || | Sbjct 53 TCTTGGTAGGAATGGTGGTGTTCCTCTTGATAAGGGCGGTCATGACACCTCCAGCGGTCT 112 Query 6948 CGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCC 7007 | | ||||| |||||||| | ||||| | ||| | |||||| || |||| ||| | Sbjct 113 CAATACCAAGGGACAGAGGAGCGACGTCAAGGAGAAGCAGGTCCTGGACAGCCTCGGACT 172 Query 7008 CTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGT 7067 || || | | |||||| || ||||| | || ||||| || || ||||||||||||| Sbjct 173 TGTCTCCAGAGAGGATGGCAGCCTGGACGGCAGCTCCGTAGGCAACAGCCTCATCGGGGT 232 Query 7068 TAATCGTTTTATTCAGTTCTTTACCG 7093 | || | || || ||||| || ||| Sbjct 233 TGATAGACTTGTTGAGTTCCTTGCCG 258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634547001140240