Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq44731 105 8e-18 seq2257 95.1 2e-14 >seq44731 Length=5866 Score = 105 bits (116), Expect = 8e-18 Identities = 142/194 (73%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 102110 AGTTCCAT-GTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCG 102167 |||||| | |||| | ||||| || || ||||| |||||||| | | || ||| | Sbjct 3616 AGTTCCCTTGTATCAAGAAGAAGGCCGACTGGGCGCTGAAGTGGATCGCCGACGAAGAGG 3557 Query 102168 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 102227 | | |||| || ||| || || ||||||| || || ||||| || |||||||| || Sbjct 3556 CCT-CCTTCGCCGAGAGAGTCATCGCATTCGCCGCCGTCGAGGGAATATTCTTCTCCGGG 3498 Query 102228 TCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 102287 |||||| | | || | ||||||||||||||| || || ||||| || ||| | ||| Sbjct 3497 TCCTTCGCCTCCATCTTTTGGCTCAAGAAGCGCGGGCTTATGCCCGGGCTCACCCAGTCC 3438 Query 102288 AACGAGCTTATCTC 102301 |||||||| ||||| Sbjct 3437 AACGAGCTCATCTC 3424 >seq2257 Length=6083 Score = 95.1 bits (104), Expect = 2e-14 Identities = 169/246 (69%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 111992 GGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTT 112051 |||| | |||| |||| || ||||| ||||||||||||||| | |||||| | | | Sbjct 2690 GGGAGCCTTCGCCATCTACCTCGAGCCCTGGCACGCGGATATCTTTGAGTTCGTGTCGCT 2749 Query 112052 GCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGAT 112111 | | ||| || |||||||| | || ||||||||| ||| || |||||| | Sbjct 2750 GAGGAAGAACACTGGGCCTGAGGAGGAGAGGGCCCGCGATCTGTTCCTGGCCCTCTGGGT 2809 Query 112112 TCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGA 112171 ||| ||||||||||||||||| ||| ||| | | | ||| | || | || || Sbjct 2810 TCCGGATCTCTTCATGAAGAGGGTTTCGGATGACGCCGACTGGGCCCTGATGTGCCCCCG 2869 Query 112172 CAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTA 112231 | || ||||| || ||| | | ||| ||||||||||| |||||||| | || Sbjct 2870 CGAGTGCCCCGGACTGGACGACGTCTGGGGAGAGGAGTTTGAGAAACTCTACACCACGT- 2928 Query 112232 CGAGGA 112237 ||||| Sbjct 2929 -GAGGA 2933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620169873765920