Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_018843.1 Length=103299 Score E Sequences producing significant alignments: (Bits) Value seq23135 179 2e-40 >seq23135 Length=601 Score = 179 bits (198), Expect = 2e-40 Identities = 329/479 (69%), Gaps = 16/479 (3%) Strand=Plus/Plus Query 56254 ACCGTATTCCAGACCTATCGCAAAGGTGTTGATGACATTACCGACACTGATCTGCGCCAG 56313 || |||||||||||||| || |||||||| ||||| |||||||| || ||||| || || Sbjct 15 ACTGTATTCCAGACCTACCGTAAAGGTGTAGATGATATTACCGATACAGATCTACGTCAA 74 Query 56314 AAGATTGCGGATTCACTGAACCGTCTGGCCAGCCGCATGACTACCGACGCGTTCATTGAC 56373 |||||| || ||||| | |||||| | || |||| ||| || ||| || ||| Sbjct 75 AAGATTAGTGACTCACTAACCCGTCTTGGTAGTAAGATGAGTACTGATCAGTTTATCGAC 134 Query 56374 GGTGGCAAGGCGTCTCTGCTCGACAATGCACTGAAAGACATTCAGGCAGAAATGTCACCA 56433 ||||| || || || || || ||||||| ||||| ||||| | |||||| ||| Sbjct 135 GGTGGTAAAGCACAACTACTTGATGATGCACTAAAAGATATTCAAGGTGAAATGGGTCCA 194 Query 56434 GTAGGTATTGAGGTTATTAGCCTGTCATGGGTGGGCAAACCAGACTACCCGGACACGGTC 56493 || |||||| || || | || || || ||| |||| ||||| || || | || Sbjct 195 GTTGGTATTCAGATTCTAAGTCTATCTTGGATGGGTAAACCTTCATATCCTCCATCAGTT 254 Query 56494 ATCGAATCTATCAATGCCAAAGTGACCGCGAACCAGAAAACGCTCCAGCGACAGCAGGAA 56553 || |||||||| || ||||| || ||||||||||| || || || || ||||| ||| Sbjct 255 GACGCTTCTATCAACGCAAAAGTAACTGCGAACCAGAAGACTCTACAACGTCAGCAAGAA 314 Query 56554 GTTGAGCAGCGCAAGGCAGAAGCGAACATGCTGCGTGAACAAGCCGAAGGTGAAGCCGAC 56613 || ||| || |||||||| | ||| ||| |||| |||| |||| || Sbjct 315 GTACTACAGAAGAACGCAGAAGCTGATATGGCTCGTTCTGAAGCAAAAGGCCAAGCAGAT 374 Query 56614 GCTATCCGCAAACGTGCT-CAAGCAGAAGCTGATGCCATTAAGT-------TGCGCGGTG 56665 || ||||| | || | ||| |||||||| | || |||| | | |||| Sbjct 375 GC------CAAAC-TACTCCTAGCTGAAGCTGAAG-CAAAAAGTATCGAAATTCTAGGTG 426 Query 56666 AAGCATTACGTCAGAACCCGAACGTCATGGAGCTGGAAGCCATCAACAAATGGAATGGT 56724 | ||| ||||| | ||| | |||| | || || |||| ||| | |||||| ||||| Sbjct 427 ACGCACTACGTAAAAACGCAGACGTTAAAGACCTAAAAGCAATCGAAAAATGGGATGGT 485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330134853447960