Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_018855.1 Length=169158 Score E Sequences producing significant alignments: (Bits) Value seq41502 123 3e-23 seq10303 82.4 8e-11 >seq41502 Length=4250 Score = 123 bits (136), Expect = 3e-23 Identities = 309/464 (67%), Gaps = 9/464 (2%) Strand=Plus/Plus Query 38065 AGAAAGAAACCTTGAACTATGCTCACCCAGTTCTTGACACTTCTAAAAGTGCGTTCTTTA 38124 |||||||||| | || || | || ||||| ||||| || ||| | ||||| Sbjct 1395 AGAAAGAAACGTATAATTACACCCATCCAGTACTTGATCAATCCAAAGAAACCTTCTTCC 1454 Query 38125 AAGATGACATC---TATACATATGACCATGATACTATTCATGAAGCCATTGCACTAACAG 38181 ||||||| | |||| ||||||||||||||||||||||| || ||||| | | | Sbjct 1455 AAGATGAAGTGGGTTATATCTATGACCATGATACTATTCATGAGGCGATTGCTATTATGG 1514 Query 38182 ACCGTCCAGCGTATACATTTTATATGAAAGACGGTTCTGAAGTCATG--ACATCACGCGA 38239 | || ||||| | | || |||||||| ||| | ||||| ||| | || | | | Sbjct 1515 ATGCACCTGCGTACAAAGAGTACATGAAAGATGGTGCGGAAGTAATGGTAGATAAAG--A 1572 Query 38240 GAAGTTCGAATCATTACCAGAAATGGTCAAATTGGCCGGTGTATACGAAGAATCATGTGT 38299 ||||||| | | | || || |||| || ||||||||||| | ||||| Sbjct 1573 GAAGTTCTTCGCTCTTTCCGAGATTAAACAATTACTAGGAGTATACGAAGAGACTTGTGT 1632 Query 38300 ACTAGCATTAGAACGTTCTCAAATTCCTAATGACTTTAAAATTAACCCTGAAGCCAGTTT 38359 ||| ||| ||||||||| | ||| || || | | || | ||| |||| || | Sbjct 1633 ACTTGCACTAGAACGTTGCCTAATCCCGTTCGATTATCAACCAACACCT-AAGCAAGCAT 1691 Query 38360 TA-TGATGGCATTAGAAAAAGTATGTACAAGCATCACCTCCGGTTGGTTCCGTGAGTATG 38418 | | ||||| || ||||| ||||| || || || |||||||||||||| | | Sbjct 1692 TCGTTATGGCTCTATCTAAAGTCTGTACTAGTATTACTAGTGGTTGGTTCCGTGAATTCG 1751 Query 38419 CCTGGGAAAACTACAGCAAAGTAGTAAGTATGTACCAAAGCTTAGGACATGATGATTACG 38478 | | | |||| | |||||| | | |||||| || || | |||||||| | Sbjct 1752 CTTATCAGAACTTCTATAAAGTAATTGCTTTGTACCGTGAGTTTGGTGAGGATGATTATG 1811 Query 38479 TCAAACGTTTCAAACAAAATTTCCATATGGTAAAACCTTTCAAA 38522 | || ||||||||| |||| |||||| | |||||||||||| Sbjct 1812 TGAATCGTTTCAAAGCAAATCAACATATGATTAAACCTTTCAAA 1855 >seq10303 Length=766 Score = 82.4 bits (90), Expect = 8e-11 Identities = 197/293 (67%), Gaps = 14/293 (5%) Strand=Plus/Minus Query 132108 TTCGTGCAGAAGGTTCTAAGATCGGTATGGGTGAAGTTCGACATACGGGTGTTATTCCAT 132167 |||||||| || |||| | ||| || ||||| | |||||| ||| | ||||||| Sbjct 751 TTCGTGCATTAGATTCTGAAATCCGTGGTGGTGACGCAGTACATACAGGTTTGATTCCAT 692 Query 132168 TC-TGGAAACATTTCC--AAACTGCAGTAAAATCTTGTTCTCAAGGTGGTATTCGTGGTG 132224 || | | || | | |||||| | ||||| ||||| |||||||| ||||||||| Sbjct 691 TCCTTTCAGCAAGTACTAAAACTG---TTAAATCATGTTCACAAGGTGGCGTTCGTGGTG 635 Query 132225 GTGCTGCTACAGCGTATT---ATCCGA-TGTGGCACTTAGAAGTAGAGAACCTATTAGTT 132280 |||| || || |||| ||| | | ||||| ||||| | || ||||| |||| Sbjct 634 GTGCAGCAAC----TATTCACTTCCCACTATGGCATCTAGAATTTGAAAACCTTGTAGTA 579 Query 132281 CTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACATATGGACTACGGAATTCAA 132340 || || ||||||||||| || |||||| |||| || | ||||| | | ||| Sbjct 578 CTAAAGAATAACAAAGGAACTGAATTTAACCGTGTTCGTCAAAGTGACTATTGCTTCCAA 519 Query 132341 ATTAATGACCTTATGATGGAACGCCTTGGTAAAAATGATTATATTACTTTATT 132393 | || | ||| | ||||| || |||| || |||||||||| || Sbjct 518 GTAAACAAACTTCTTTATGAACGTCTAACTAAACGTGGAAATATTACTTTCTT 466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540678458370080