Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2257 127 4e-24 seq44731 120 6e-22 >seq2257 Length=6083 Score = 127 bits (140), Expect = 4e-24 Identities = 208/299 (70%), Gaps = 3/299 (1%) Strand=Plus/Minus Query 213747 CCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCA 213806 |||||||| ||||||||| || || ||| ||||| ||| |||||| ||||| Sbjct 2899 CCCCAGACGTCGTCCAGTCCGGGGCACTCGCGGGGGCACATCAGGGCCCAGTCGGCGTCA 2840 Query 213807 TCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTC 213866 || || |||| |||||| || ||||| ||||| || || |||||| || | || | Sbjct 2839 TCCGAAACCCTCTTCATGAAGAGATCCGGAACCCAGAGGGCCAGGAACAGATCGCGGGCC 2780 Query 213867 CTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGC 213926 ||| ||| || |||| ||| || | ||| | || |||||||| ||||||||| Sbjct 2779 CTCTCCTCCTCAGGCCCAGTGTTCTTCCTCAGCGACACGAACTCAAAGATATCCGCGTGC 2720 Query 213927 CACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGC 213983 || ||||| | ||||||||| ||||| |||| || | ||||| ||||| ||||| Sbjct 2719 CAGGGCTCGAGGTAGATGGCGAAGGCTCCCGGACGCTTGTTGCCTCCCTGATCCACGTAG 2660 Query 213984 CTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGT 214042 | || ||||| ||| || || | ||| | ||| ||||| || |||||||| Sbjct 2659 CGAGCGGTGTTGTTGTAGACACGGAGCATGGGGATCAGTCCGTTCGAGGTACCGTTGGT 2601 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 213483 AGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATC 213542 ||||||||| ||||| |||||||||||| ||||| | | | | |||||| | |||| Sbjct 3280 AGGGCGATGGAGGCCAAGTTGCAAACGGCGACCTCATCGGGGCTGGAGTACTCGACGATC 3221 Query 213543 TCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTT 213589 || |||||||||||| ||| |||||| ||||||||||| ||||| Sbjct 3220 TCAGTGCACAGGTTGGAGCACTTGATGGTTCCCAGGTTCTGCTGGTT 3174 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 212927 ACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTT 212986 ||| || || ||||| | ||| | ||| || ||||||||||| ||| |||||||| Sbjct 3906 ACCGGAAAGGACCCTTCGGCTGTAGATGTTGGAGGTGTAGGGCTCAATGGATTCGTTGTT 3847 Query 212987 CCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCAC 213046 || || ||||||||||| ||| || ||||| || |||| ||||||||||| | ||| Sbjct 3846 TCCGAGGATCTGTGCAGTAGAGGCCGTCGGCATCGGTGCCAGGAGGAGACTGTTGCGCAC 3787 Query 213047 TCCGTGCT 213054 ||||| || Sbjct 3786 TCCGTACT 3779 >seq44731 Length=5866 Score = 120 bits (132), Expect = 6e-22 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 48166 GATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAAT 48225 ||||||| ||||||| | ||| || ||||| | ||| | || |||||||| || || Sbjct 3426 GATGAGCTCGTTGGACTGGGTGAGCCCGGGCATAAGCCCGCGCTTCTTGAGCCAAAAGAT 3485 Query 48226 TGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTC 48285 | ||||| || || |||||||| || ||||| || || ||||| ||| ||| ||||| Sbjct 3486 GGAGGCGAAGGACCCGGAGAAGAATATTCCCTCGACGGCGGCGAATGCGATGACTCTCTC 3545 Query 48286 TCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGAT 48345 |||| || || | | ||| | |||||| ||||||||||| |||||||||||||| Sbjct 3546 GGCGAAGGAGGCCTCTTCGTCGGCGATCCACTTCAGCGCCCAGTCGGCCTTCTTCTTGAT 3605 Query 48346 GCATGG 48351 || || Sbjct 3606 ACAAGG 3611 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/95 (81%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 48420 TTGC-GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTG 48478 |||| |||||||||||| || | ||||| || ||||||||||| ||||||||| || | Sbjct 3716 TTGCTGTACATCTCAGAATGGATGTTCTCAATGGCGATCTGGAATCCGTAGAAGAACCGG 3775 Query 48479 GCCTCAAACACCTGCACTTCTGTGGAGAATCTCTC 48513 |||||| | ||||| ||||| | ||||||| ||| Sbjct 3776 GCCTCAGAGACCTGGACTTCCTTCGAGAATCGCTC 3810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930673624010240