Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq33536 210 2e-49 seq41502 131 2e-25 >seq33536 Length=1950 Score = 210 bits (232), Expect = 2e-49 Identities = 948/1473 (64%), Gaps = 56/1473 (4%) Strand=Plus/Minus Query 125655 CATTGATCCACGGGCTGATTAATACCAAAATAGTGAATATGTTCATAAGCGTAGTCTACT 125714 |||| ||| || || || ||||||||||| || | | | ||||||| || || || || Sbjct 1495 CATTTATCTACTGGTTGGTTAATACCAAAGTACGGTACACGTTCATATGCATAATCGACC 1436 Query 125715 AAAGTCTCCAAAGCTTCTAAGTTATTCTTTAAGTTTGGTGTTTCGACATAACTTATGTTA 125774 || | || || ||| || ||||| || | |||||||||||| |||||||| || || Sbjct 1435 AATGCTTCTAAGGCTGTTATATTATTTTTAAGGTTTGGTGTTTCAACATAACTAATATTC 1376 Query 125775 CCACCATTACTAATCTGTGCAAAACCTGCTTCATAATCCCATTTTTCAAAAGGATTTGTT 125834 || |||||||| | |||||||||| ||||||||| |||||| || | ||| || Sbjct 1375 CCGCCATTACTCAAGAATGCAAAACCTTCTTCATAATTCCATTTCTCTAGCGGAGAACTT 1316 Query 125835 ACCAACCACACAGGTTGATGAAAAGAGTTAGTAAGATAATCTCTTTCTACCAAACCTGGG 125894 | | ||| || || || || || |||||||| | |||||| | || || | ||| Sbjct 1315 TCAATCCATACTGGCTGGTGGAATGAGTTAGTGATATAATCACGTTTTAGTACTGAAGGG 1256 Query 125895 TATTT-TTC---ATTTAAAGCTGTTGCAAACTTATAGCACAAGGAT-TCTGCTGGAGTTC 125949 ||||| ||| ||| || | ||||||||| ||||| |||| | |||||||| |||| Sbjct 1255 TATTTCTTCTCAATTGAACG----TGCAAACTTGTAGCA-AAGGCTCTCTGCTGGTGTTC 1201 Query 125950 CATAGAGACTAAACGCCAAATTAGATCGT-TCTTTAAACACAGCACACACATCTTTCATA 126008 |||| |||||||| | || || || | || |||| | ||||| ||||||| Sbjct 1200 CATATAGACTAAAGGATAATCTA-CTCTTCACTCTAAAATCTTCACACTTGGATTTCATA 1142 Query 126009 TGTTGCAGAATGTTTTTACCAAGTTCCTTTTTATC--TTTTTCTTCTGGATAAAGGATTT 126066 | ||||| |||| || | ||||||| ||| | || || |||| Sbjct 1141 TAGGATAGAATAGACTTAC--AG-AACGTTTTATCGAGACTTCCTTTG-----AGTATTT 1090 Query 126067 CCAAAGCTTCGGCAAGACCTACATAACCAATACTAATAGAAGCATAACCACCTTCAAACA 126126 | || ||| || | ||||||| | |||||||||||| ||||| ||| | | ||| | Sbjct 1089 CTGAACATTCTGCTAAACCTACAAATCCAATACTAATACTTGCATACCCATCGTAAAATA 1030 Query 126127 AAACACCAATTTCATCGTTGGCATTTAAACGCGCTAAAGCCCCTTCCATGAAAAGAATAG 126186 | || || | | | |||||| || | | | ||||| |||||||||| | Sbjct 1029 GCTGTTCGATAGTATTTTCTGGGTCTAAACGTGCAAGAACTCCTTCAGTGAAAAGAATTG 970 Query 126187 GGTTTTCAGATGCTTTGGTATG-TC-TGATACGGTTTACACGTAGCATGTGAGCATCGTA 126244 |||| | ||||| ||| || | | ||| | |||||| ||| |||||| || Sbjct 969 GGTTCTGCTTCGCTTT--CATGCTCTTTAAACGCTCTACACGGTTCATCTGAGCACGATA 912 Query 126245 GGCTATCTCCATATGTTTATTAAGAAGATCGGTGAAAGATTCTCCTTTACTTCTCGCTTC 126304 || || | |||||| | | | | | |||| ||||| | | | ||| ||| Sbjct 911 TGCCATTTGCATATGCTGGTCTACCTTAGCAAAGAAA---TCTCCGTCAGTGGTCGATTC 855 Query 126305 CGCAGCGATCAGAGGTAAGTTGATAGAAACTACTCCAAGGTTGAATCGTCCATCGTATTT 126364 || | || || | |||||| || ||||| | ||| || ||||| | ||| Sbjct 854 AAGGGCTAACAATGGAAGATTGATACTCACCACTCCTAAGTTAAAGCGTCCGTTGTAACG 795 Query 126365 TTC---TCCTTGTTCTGTGGCATAGTACGACAAAAAGGAACGACAACCCATACTCGTAAC 126421 ||| || | || | ||| || | ||||| || ||||||||| ||||| Sbjct 794 TTCCGAACCATTCTCATCAACCCAGTGGGATAGGAAGGATCGGCAACCCATAGGAGTAAC 735 Query 126422 AGTGCCATCTGCTGATCCC---GTAACTTCTTTGTTCAAAGGAACAGAAATAAAATCTGG 126478 || | |||| | | | || |||| ||| || || || |||| || || || Sbjct 734 AG---CTTCTGAAGTACTCTTGGTTACTTTCAAGTTTAATGGGACTGAAACGAAGTCGGG 678 Query 126479 ATAAATACGATCAGCACAACATGCCAAAGCTTGTTGCTTAAGGTCATAGTTAGGATCACT 126538 ||| ||||| | ||| |||| | |||| ||| || | || |||||| ||| Sbjct 677 ATATATACGTTTAGCTGCACATTGTAGTGCTTTTTGTTTTAAATCGTAGTTACAATCTTC 618 Query 126539 AGGTTTCATGTTAACACCTTCTTGTAAAAAGAAAATAACTTTAGGGAATACAGGCGTTAC 126598 || |||| || | |||||| || | ||||| | ||||||||| ||||| || || | Sbjct 617 AGTACTCATATTGATACCTTCCTGAAGGAAGAACACAACTTTAGGAAATACGGGTGTAGC 558 Query 126599 ATGATCTTTGCCTAGACCATTACTATGCAC-TTTAAG-ATAGTTAGCTGTGATCATTCTG 126656 | ||| | |||| || || ||| || | ||| || || | || |||||| | Sbjct 557 ACCGTCTATTCCTAATCCTTTTTCATGAACATCCAAGTATGATT--CGGTAATCATTTTC 500 Query 126657 CCAAAAACAGAGGTATCCAGACCCATACTGATTGTAATAAAAGGAGATTGTCCATTAACA 126716 || || ||| ||| || || | || || || | || || | ||| |||||| Sbjct 499 CCGAACTTAGAAGTACTCAATCCTAAGCTAATAGTGACGAATGGTGTTTGCCCATTACTT 440 Query 126717 CTCATTAAAGTATTAACCTGATACAAGAGAGTTTGCATAGCATCATATACATCTTGTTCG 126776 | | ||||| || || ||||| | | |||||| |||||||| || |||| | || Sbjct 439 GATGTGATTGTATTCACTTGGTACAACAACGCTTGCATTGCATCATAAACTTCTT-TACG 381 Query 126777 --GTCATTTCTAGGGCTTCTTTCCTTGCATAACAACCGTAGCGACGTTTGGTTATCTCCA 126834 | | | || | | || | || ||| | || | ||| ||| | | Sbjct 380 TAATGAATACTCAACATAC--TCATCGC-TAAGA---TTAAATTCTTTTTGTTGTTGTAA 327 Query 126835 T-GTTTTTAAGGAAACTAGCT-TCAACATAAGGACTAAGACCTTTATCAATGTGCGCACA 126892 | |||||| || | | | || ||||| || | ||| ||||||||| | Sbjct 326 TAGTTTTT---GATAGGATTTCTCTACATATGGTTCCAAACCACGATCAATGTGTGGTAG 270 Query 126893 CGTCTGACCTCCATACTGACTGGAGGCAACAGCTTGGATGATTTGAGTTAGCACTGTGGT 126952 | ||||| || || || | | ||| ||| | | ||||| ||||| | ||| | Sbjct 269 GGATTGACCACCGTATTGTGATGCTGAAACTGCTAGTACTATTTGTGTTAGTATTGTACT 210 Query 126953 AGCTACTCCAATAGATTTTGGTTTTTCTATCTGTGCGGCACCGATTTTAAAACCATTTTC 127012 || ||||||||| ||||| | | |||||| ||| |||||||||||||| | Sbjct 209 TGCCACTCCAATACTATTTGGGGAACCAACTTGTGCGTTACCAATTTTAAAACCATTAGC 150 Query 127013 TAACATATCTTGATAATTAACAAGACAACAGTTTGTAAGAGGAGAGAGCAGATAATCCAA 127072 ||||||||||| ||||||||| | ||| ||||| || | ||| | ||||| | Sbjct 149 TAACATATCTTCATAATTAACTAAACAGCAGTTGGTTAATGGACTAATATAGTAATCTAG 90 Query 127073 GTCGTGAATATGTCCAAAACCTTCTGTATGCCA 127105 ||| |||||||| ||| | || || |||||||| Sbjct 89 GTCATGAATATGACCATATCCATCAGTATGCCA 57 >seq41502 Length=4250 Score = 131 bits (144), Expect = 2e-25 Identities = 319/479 (67%), Gaps = 16/479 (3%) Strand=Plus/Minus Query 27206 AAAGGCTTAACTACATGTTGATTAGCTTTAAAACGTTCAACATAATCGTTTTCGCCCATG 27265 ||||| |||| | ||||||||| ||||| ||||| | |||||||| | || || | Sbjct 1851 AAAGGTTTAATCATATGTTGATTTGCTTTGAAACGATTCACATAATCATCCTCACCAAAC 1792 Query 27266 TTTTCATATAGCTTAGTAACAACATAAAAGTTTTCCCAAGCATATTCCCTAAACCAACCA 27325 | || | | | || ||| ||||| | |||| |||| | ||||||||| Sbjct 1791 TCACGGTACAAAGCAATTACTTTATAGAAGTTCTGATAAGCGAATTCACGGAACCAACCA 1732 Query 27326 CTAGTGATGGATGTGCAGACTTTAGATAAAGCCATTATAAAACTTTGCTTAGGGGTTGGA 27385 ||||| || || ||||||||||||| |||||| | || ||||||||| ||||| Sbjct 1731 CTAGTAATACTAGTACAGACTTTAGATAGAGCCATAACGAATGCTTGCTTAGGTGTTGGT 1672 Query 27386 CCTCCGATCTCTTCACCGAAAGGAATTTGTGAACGTTCCAAAGCCAAAACACACGCTTCT 27445 ||| | |||| || ||| | ||||||| | || | ||||| | ||| Sbjct 1671 T----GATA-----ATCGAACGGGATTAGGCAACGTTCTAGTGCAAGTACACAAGTCTCT 1621 Query 27446 TCATAAACACCTAACAGGCGCACATGTTTTGGTTGAGCAAAAAACTTTTCTTTGCTGGTC 27505 || || || |||| | | | | | |||| || ||||| ||||| | Sbjct 1620 TCGTATACTCCTAGTAATTGTTTAATCTCGGAAAGAGCGAAGAACTTCTCTTTATCTACC 1561 Query 27506 ATAACTTCACTTCCATCTTTCATATAAGATTTATATGCTGGAGCATCCATTACCGCGATT 27565 || ||||| ||||||||||| || ||| || || || |||||||| | || || Sbjct 1560 ATTACTTCCGCACCATCTTTCATGTACTCTTTGTACGCAGGTGCATCCATAATAGCAATC 1501 Query 27566 GCTTCATGGATAGAATCATGATCATAAACATACGGAACCTCATCACCTTTAAAGAAGTCT 27625 || ||||| |||| |||||| ||||| | ||| | || | ||| ||| |||||| Sbjct 1500 GCCTCATGAATAGTATCATGGTCATAGATATA---ACCCACTTCATCTTGGAAGAAG--G 1446 Query 27626 TTACTTTTTA-CGTTTAAGTTC-GGATGAGAGTAAGTGTATGTTTCTTTCTCACGCAAT 27682 || |||| | | | |||| | ||||| | |||| | || |||||||||||||||||| Sbjct 1445 TTTCTTTGGATTGATCAAGTACTGGATGGGTGTAATTATACGTTTCTTTCTCACGCAAT 1387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472194481166320