Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq679 248 1e-60 seq17487 132 6e-26 seq72756 120 4e-22 seq35470 107 3e-18 seq6063 100 4e-16 seq8647 96.9 5e-15 >seq679 Length=2491 Score = 248 bits (274), Expect = 1e-60 Identities = 736/1124 (65%), Gaps = 16/1124 (1%) Strand=Plus/Minus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 |||||||| ||||| || || | | | |||| | | |||||||| || || | || Sbjct 1667 AAGATGAAAGAGACGGCCGAGACCTACCTGGGACACTCGGTGAAAGACGCCGTGATCACA 1608 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || ||||| ||||||| || || |||||||||| ||||| || || | ||||| Sbjct 1607 GTGCCTGCCTACTTCAACGACAGCCAGAGACAGGCGACCAAGGATGCGGCCGTGATTGCT 1548 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 || || ||| | || || ||||||||||| || || ||||| | || ||||| ||| Sbjct 1547 GGACTGAACGCAGTGAGGATCATCAATGAACCGACGGCTGCTGCCCTGGCCTATGGACTG 1488 Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901 |||||| ||||| | ||| | | || | |||||||| || || || || || ||| Sbjct 1487 GACAAG---AAGGAGGGAGACCGACACGTCCTCATCTTTGACCTGGGAGGAGGAACCTTT 1431 Query 195902 GATGTCTCACTTCT-CAA--TATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGT 195958 |||||||| |||| ||| | ||||| | | |||||||| || || |||||||| Sbjct 1430 GATGTCTCTATTCTACAAATCAGCGAAGGATCTCTCTTCGAAGTGAAAGCGACTGCTGGA 1371 Query 195959 GATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGATGAG 196018 || || ||||| || || ||||| || || |||||||| ||| || | | ||| Sbjct 1370 GACACCCATCTCGGAGGAGAAGACTTTGACCAACGTCTTCAAGAGCATCTGGCAGCCGAG 1311 Query 196019 TTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGG 196078 |||| | || | || | || || || || || |||||||| ||||| ||| | Sbjct 1310 TTCCAAAGGAAAACCAAAAGGGACCTTCGTGAGAACCCGAGGGCTCTGCGTCGTCTTCGA 1251 Query 196079 ACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATT 196138 ||||| |||||| | ||||| | ||||| | | ||| || | || | ||| | Sbjct 1250 ACTGCCTGTGAAAGCGCCAAGAGGACTCTGAGTAGCTCAGCTGAAGCCATCATCGAGCTG 1191 Query 196139 GATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAG 196198 ||||| | || || ||| | || |||| || | | ||| | || || |||||||| Sbjct 1190 GATTCTATCTTCGAAGGACTGGATTTCTCCACCAAAGTGACCAGGGCTCGATTTGAAGAA 1131 Query 196199 TTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCA 196258 | | || | || | || ||||||| || || | | ||||| || || Sbjct 1130 CTCTGCAACGACCTCTTCCGCAAAACACTGGAACCCGTAGAGAAGGCTCTTCGAGATGCC 1071 Query 196259 AAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCG 196318 ||||| ||| || | || || | || || || ||||| || || || ||||| Sbjct 1070 CGCATGGACAAGAAACAGATCGACGAGGTGGTGCTGGTTGGAGGCTCCACACGCATTCC- 1012 Query 196319 AAGATTCAACAGATGCT--TTCTAG-CTTCTTCAATAATAAAGATTTAAACAAAACGATC 196375 || | |||| ||| ||| | ||| ||||| || || | ||| | ||| Sbjct 1011 TCGAGT--GCAGAAGCTACTTCGCGACTTTTTCAACGGAAAGGAACTCAACTGCAGCATC 954 Query 196376 AACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTT 196435 ||||| || ||||| |||||||| || || || ||||| | || | | | || || Sbjct 953 AACCCCGACGAAGCCGTTGCTTACGGAGCCGCTGTTCAAGGAGCCGTGTTGGCTGGAGTC 894 Query 196436 GACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTT 196495 | | ||| | || | || | ||||| | |||||||| || | || || | Sbjct 893 CAGGACAATGCCATCAAGGACGTGCTGCTCGTCGATGTTGCTCCGCTGAGTCTTGGAATC 834 Query 196496 GAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAG 196555 || || || || || || ||||| ||| | || || | |||| || || || ||| Sbjct 833 GAGACTGCTGGAGGAGTGATGACGAAACTGATCGAACGCAACAGCCGAATCCCAACCAAG 774 Query 196556 AAGGAACAAGTCTTTTCA--ACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTAT 196613 | | || | |||| || || || || || || || | ||| || ||||| | Sbjct 773 -GCTAGCCAGAC-CTTCAGCACCTACTCGGACAACCAGCCGGCTGTCACAATCCAAGTGT 716 Query 196614 ATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGG 196673 ||||||||||||| | | ||||| ||||| | || ||||| ||||| | || | Sbjct 715 ATGAAGGAGAACGAGCGATGACCAAGGACAACCACCGCCTCGGAACATTCGAACTCACCG 656 Query 196674 GGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAA 196733 | || || |||| || |||| ||||| ||||| | || | |||| | || ||||| | Sbjct 655 GAATCCCGCCTGCTCCACGAGGAGTTCCTCAGATCGAAGTCTCCTTCAACATTGACGCCA 596 Query 196734 ATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAA 196777 |||| ||||| | |||| | || || ||||| | |||| ||| Sbjct 595 ATGGCATTCTCAGCGTCTCTGCCGAAGACAAATCCACTGGAAAA 552 >seq17487 Length=3481 Score = 132 bits (146), Expect = 6e-26 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || ||||| || || ||||| |||||||| |||||||||||| | || Sbjct 295 ATGCAAATCTTCGTCAAAACTCTCACCGGAAAGACTATCACTCTCGAGGTTGAGGCCTCC 236 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| || ||||| || || ||||| || ||||| ||||||||| Sbjct 235 GACACCATCGAAAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCCGATCAG 176 Query 171982 CAACGACTTATTTTTGCTGGT 172002 || || || || || |||||| Sbjct 175 CAGCGTCTGATCTTCGCTGGT 155 >seq72756 Length=1554 Score = 120 bits (132), Expect = 4e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || || || || || ||||| || || ||||||||||| ||| | || Sbjct 51 ATGCAAATCTTCGTCAAGACACTCACCGGAAAGACCATTACCCTCGAGGTGGAGGCCTCC 110 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || |||||||| || |||||||| || ||||| ||||||||| Sbjct 111 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCAG 170 Query 171982 CAACGACTTATTTTTGCTGGT 172002 || || || || || || ||| Sbjct 171 CAGCGCCTGATCTTCGCCGGT 191 >seq35470 Length=1843 Score = 107 bits (118), Expect = 3e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171859 AGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCG 171918 || ||||| ||||| || || || || || ||||| || ||||| | ||||| ||| | Sbjct 242 AGGATGCAGATCTTCGTTAAGACACTCACCGGAAAGACCATCACTTTGGAGGTCGAGGCT 183 Query 171919 TCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGAT 171978 || ||||| || || ||| |||| |||||||| || || ||||| || || || |||||| Sbjct 182 TCGGACACGATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGAT 123 Query 171979 CAGCAACGACTTATTTTTGCTGGT 172002 ||||| || || || ||||| ||| Sbjct 122 CAGCAGCGTCTCATCTTTGCCGGT 99 >seq6063 Length=776 Score = 100 bits (110), Expect = 4e-16 Identities = 114/152 (75%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 171852 TACTAGTAGT-ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGG 171910 || ||| ||| ||| |||||| ||||| || || || ||||| || || |||||||||| Sbjct 626 TATTAGGAGTCATGAAAATCTACGTGAAGACTCTCACCGGAAAGACCATAACCCTCGAGG 567 Query 171911 TTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTC 171970 |||| || ||||| || || ||| |||| |||||||| || ||||| || |||| Sbjct 566 TTGAACTCTCTGACACGATTGAGAACGTCAAGCAAAAGATTCAGGACAAGGAGGGAATTC 507 Query 171971 CACCCGATCAGCAACGACTTATTTTTGCTGGT 172002 | ||||| ||||| || || || || || ||| Sbjct 506 CTCCCGAGCAGCAGCGCCTGATCTTCGCCGGT 475 >seq8647 Length=250 Score = 96.9 bits (106), Expect = 5e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 195707 GATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGAC 195766 || || ||||| || || || || ||||||| ||| || || || ||||| || |||||| Sbjct 73 GACGCCGTTGTCACCGTTCCCGCCTACTTCAATGACTCTCAGCGTCAGGCCACCAAGGAC 132 Query 195767 GCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCA 195826 |||| || || | || || ||| || | |||||||| || || || || ||||| Sbjct 133 GCTGGAGCCATCTCCGGACTCAACGTCCTCCGCATTATCAACGAGCCCACGGCCGCTGCC 192 Query 195827 ATTGCTTATGGTCTGGACAAGAA 195849 || ||||| |||||||||||||| Sbjct 193 ATCGCTTACGGTCTGGACAAGAA 215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657255637061920