Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq6209 154 2e-31 seq44731 127 2e-23 seq2257 98.7 1e-14 >seq6209 Length=16184 Score = 154 bits (170), Expect = 2e-31 Identities = 151/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 ||||||||||||||||||| | | |||||| |||||| | | || || ||| || Sbjct 12713 AGAAGCGCACCGACGACATTCCCTCCTGGGACGTGGAGTTCCTCAAGGTTGACCAGGGCA 12654 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 |||| || ||| ||||||| || |||||||| |||||||||||| || || || | Sbjct 12653 CCCTGTTCGAGCTGATCCTGGCTGCCAACTATCTCGACATCAAGGGACTTCTGGACGTCA 12594 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| | || ||||||||||||||||||||| | ||||||||||| ||| |||| Sbjct 12593 CCTGCAAGACCGTCGCCAACATGATCAAGGGCAAGACTCCCGAGGAGATTCGCCGCACCT 12534 Query 1592286 TTAACATCAAGTACG 1592300 | ||||||||| ||| Sbjct 12533 TCAACATCAAGAACG 12519 >seq44731 Length=5866 Score = 127 bits (140), Expect = 2e-23 Identities = 126/162 (78%), Gaps = 7/162 (4%) Strand=Plus/Plus Query 869212 GGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGA 869271 || ||| |||||||| || ||||||||||||||||||||||||| | ||| || || Sbjct 3444 GGTGAGCCCGGGCATAAGCCCGCGCTTCTTGAGCCAAAAGATGGAGGCGAAGGACCCGGA 3503 Query 869272 GAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGC- 869330 ||| || || |||||||||||||| || |||||| | |||||| ||| ||||| Sbjct 3504 GAAGAATATTCCCTCGACGGCGGCGAATGCGATGACTCTCTCGGCGAAG-----GAGGCC 3558 Query 869331 -CCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTC 869371 | || | | ||||||||||| ||||||||||||||| ||| Sbjct 3559 TCTTCGTCGGCGATCCACTTCAGCGCCCAGTCGGCCTTCTTC 3600 >seq2257 Length=6083 Score = 98.7 bits (108), Expect = 1e-14 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 1630152 GCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGGCCGACTTGGAGATGAG 1630211 ||||| |||||| | |||||| || | |||||| || ||||| ||||||||| || Sbjct 2543 GCCGGTGGCGCGGATCTTGTGGACGTTGAGGCCGATTCCTCCGGCACTCTTGGAGATCAG 2484 Query 1630212 CGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGGCCTTCATGTCCACGAG 1630271 |||||||| || |||||||||||||| || |||||||||| | |||| || ||| Sbjct 2483 GGCGCACTGCTTCAGCGTGTCGTAGATTCCGCCGATCGAGTCCTCGGACATGGTCAGGAG 2424 Query 1630272 AAAGCACGACGA 1630283 ||||| ||||| Sbjct 2423 GAAGCAAGACGA 2412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6101083975300162