Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq16039 143 2e-29 seq25958 120 3e-22 >seq16039 Length=12455 Score = 143 bits (158), Expect = 2e-29 Identities = 241/355 (68%), Gaps = 48/355 (14%) Strand=Plus/Plus Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGG 34380 || |||||||| ||||| |||| |||| ||| ||||| ||||||||| || | || Sbjct 10950 GTTTCCGGGTTATCACAAGCCGGGCACAGCACGAACTTCTTGATGAAACCGTCCAAAAGA 11009 Query 34381 TCCTGTA-AC--TTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAA 34437 ||||| | || || || ||||| || ||||||||||| |||||||| || Sbjct 11010 TCCTGCAGACGGTT---GGCATCGTGCTCTCCATTGACGATGAAGCGTTCGTTCTTAGCG 11066 Query 34438 TCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGT----------- 34486 || | | || || || |||| |||||||||||||||||| || |||| Sbjct 11067 TCAAAGTTGGTCTGGGCACCCAACTCGCACCCGAAGTACTTGGTAGGGTCTAAAGGATTA 11126 Query 34487 -----------------------------AAATGGCCGGACGTCCAAGCGCCTTGGCGAT 34517 | |||| || || | || |||||||| || Sbjct 11127 CAATAACAGGCTCCATGAAGAAAACATACACATGGAGGGGCGCTCCAGAGCCTTGGCTAT 11186 Query 34518 TTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACCTTGGCGCA 34577 |||| ||||||||||| |||||||||||||||||| |||||||| |||||||| || | Sbjct 11187 ATCGGCCATGTTGACGACGACAGTCTTGATGCCGTTTCCCTTTCCCTCGACCTTAGC-AA 11245 Query 34578 GATGC-GCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCGGTTAACGTT 34631 || || ||||||||||||||||||||| | ||| | ||| |||||| ||||| Sbjct 11246 GAAGCTTCGGCATTTTGTAGCGGTAGAAGGGGTCAGTGACAGCGCGGTTCACGTT 11300 >seq25958 Length=4164 Score = 120 bits (132), Expect = 3e-22 Identities = 235/356 (66%), Gaps = 45/356 (13%) Strand=Plus/Plus Query 34319 CAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCA 34378 ||||||||||||||||||| ||||||| | || ||||| |||||||| || || | Sbjct 2375 CAGTCTCCGGGTTGTCACAAGCCGGACAGAGAACGAACTTCTTTATGAAACCGTCCAGGA 2434 Query 34379 GGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAAT 34438 ||| |||||||| || | |||||| || || |||||| | || |||||||| | Sbjct 2435 TGTCTTGTAACTTGACCGCGTCGTGCTCTCCATTCACGATGTAACGCTCGTTTTTCGCGT 2494 Query 34439 CGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGT---AAATG---- 34491 | | | || || || ||||| || || ||||||||||| || |||| ||||| Sbjct 2495 CAAAGTTGGTCTGGGCACCCAGTTCACAGCCGAAGTACTTGGTGGGGTCTAAAATGACAA 2554 Query 34492 ----------------------------------GCCGGACGTCCAAGCGCCTTGGCGAT 34517 || || ||| | || | ||| ||||| Sbjct 2555 ATAGAGTTCACTAAATGTGATGTACTTACACATTGCAGGGCGTTCGAGAGACTTCGCGAT 2614 Query 34518 TTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACCTTGGC--G 34575 || | |||||| ||||||| || ||||| |||||||||||||| || || || || | Sbjct 2615 CTCAGTCATGTTCGCGATGACGGTTTTGATACCGTTGCCCTTTCCCTCCACTTTTGCCAG 2674 Query 34576 CAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCGGTTAACGTT 34631 ||| | ||||| |||||||||||||| | ||| | ||| ||||| ||||| Sbjct 2675 CAGTT--TGGGCATCTTGTAGCGGTAGAAGGGGTCGGTAACAGCACGGTTCACGTT 2728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412470345224498