Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq6209 149 1e-29 seq44731 107 3e-17 seq10164 89.7 8e-12 >seq6209 Length=16184 Score = 149 bits (164), Expect = 1e-29 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 2035565 CGACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACC 2035624 ||| |||||||||||||||||| | | |||||| || || | |||| ||||| Sbjct 12715 CGAGAAGCGCACCGACGACATTCCCTCCTGGGACGTGGAGTTCCTCAAGGTTGACCAGGG 12656 Query 2035625 CACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTT 2035684 |||||| || ||| ||||||| || |||||||| |||||||||||| || || || | Sbjct 12655 CACCCTGTTCGAGCTGATCCTGGCTGCCAACTATCTCGACATCAAGGGACTTCTGGACGT 12596 Query 2035685 GGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGAC 2035744 ||||||||||| |||||| | |||||||||||| | |||||||| || ||| || Sbjct 12595 CACCTGCAAGACCGTCGCCAACATGATCAAGGGCAAGACTCCCGAGGAGATTCGCCGCAC 12536 Query 2035745 CTTTAACATCAAGTACG 2035761 ||| ||||||||| ||| Sbjct 12535 CTTCAACATCAAGAACG 12519 >seq44731 Length=5866 Score = 107 bits (118), Expect = 3e-17 Identities = 121/160 (76%), Gaps = 9/160 (6%) Strand=Plus/Plus Query 794376 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAA 794435 ||| |||||||| || ||||||||||||||||||||||||| ||| || ||||| Sbjct 3447 GAGCCCGGGCATAAGCCCGCGCTTCTTGAGCCAAAAGATGGAGGCGAAGGACCCGGAGAA 3506 Query 794436 AAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTC 794495 || || |||||||||||||| || ||| || | |||||| || | ||| |||| Sbjct 3507 GAATATTCCCTCGACGGCGGCGAATGCGATGACTCTCTCGGCGAAGG-----AGG-CCTC 3560 Query 794496 TTTGT---TGATCCACTTCATCGCCCACTCTGCCTTTTTC 794532 || || ||||||||||| |||||| || ||||| ||| Sbjct 3561 TTCGTCGGCGATCCACTTCAGCGCCCAGTCGGCCTTCTTC 3600 >seq10164 Length=1222 Score = 89.7 bits (98), Expect = 8e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||| ||||| || ||||||||| |||||| || ||| ||| Sbjct 761 TGTACTTGGTAACGGCCTTGGTTCCCTCAGACACGGCGTGCTTGGCCAACTCTCCGGGCA 820 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCT 1485556 |||||| || ||||| || |||| || Sbjct 821 GGATCAGACGGACGGCCGTTTGGACCT 847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7908397446642054