Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_023693.1 Length=148612 Score E Sequences producing significant alignments: (Bits) Value seq33536 141 9e-29 >seq33536 Length=1950 Score = 141 bits (156), Expect = 9e-29 Identities = 244/349 (70%), Gaps = 14/349 (4%) Strand=Plus/Minus Query 118959 AAATTCACCATGAAAACCACATTTGAAACACTGATCTACAGGTTGGTTCACGCCAAAATA 119018 ||| ||||| | ||| |||| |||| | |||||| |||||||| | ||||| || Sbjct 1523 AAACTCACCTTCGAAATTGCATTCATAACATTTATCTACTGGTTGGTTAATACCAAAGTA 1464 Query 119019 AGGAATTTTATTGTAGGCATAATCTACAAGAGTTTCCAGTGCTTGCAAGTTATTTTTAAG 119078 || | | || |||||||| || | | ||| | ||| | ||||||||||| Sbjct 1463 CGGTACACGTTCATATGCATAATCGACCAATGCTTCTAAGGCTGTTATATTATTTTTAAG 1404 Query 119079 GTTTGGTGTTTCTACATAACCTATGTTCCCACCATTACTAATTTGTGCAAAACCTTCCTC 119138 |||||||||||| ||||||| || ||||| |||||||| | |||||||||||| || Sbjct 1403 GTTTGGTGTTTCAACATAACTAATATTCCCGCCATTACTCAAGAATGCAAAACCTTCTTC 1344 Query 119139 ATAATCCCACTTTTGGAACGGGGTAGTGTGCATCCATACAGGTTGATGGAAAGAGTTTGT 119198 ||||| ||| || | | ||| | | | | |||||||| || || ||||| ||||| || Sbjct 1343 ATAATTCCATTTCTCTAGCGGAGAACTTTCAATCCATACTGGCTGGTGGAATGAGTTAGT 1284 Query 119199 CAAGTAGTCACGATCAATAGAAC--CAGGATAGCGAT----CATTTAACGCTTTGGCAAA 119252 | || ||||| | ||| || ||| || | ||| |||| ||||| Sbjct 1283 GATATAATCACGTT--TTAGTACTGAAGGGTATTTCTTCTCAATTGAACG----TGCAAA 1230 Query 119253 TTTATAGCACAAGGAT-TCTGCTGGTGTTCCATACAAACTAAAAGCTAA 119300 || ||||| |||| | ||||||||||||||||| | |||||| | ||| Sbjct 1229 CTTGTAGCA-AAGGCTCTCTGCTGGTGTTCCATATAGACTAAAGGATAA 1182 Score = 111 bits (122), Expect = 1e-19 Identities = 424/659 (64%), Gaps = 30/659 (5%) Strand=Plus/Minus Query 120063 GTTTAAAGGTACAGAGATAAAATCAGGATAAATGCGTTCAGCACAACACTCCATTGCCAG 120122 |||||| || || || | || || ||||| || |||| ||| ||| | | ||| Sbjct 704 GTTTAATGGGACTGAAACGAAGTCGGGATATATACGTTTAGCTGCACATTGTAGTGCTTT 645 Query 120123 TTGCTTCAAATCATAGTTTGGATCGCCAGCTTTCATGTTAACACCATCTTCCAAGAAGAA 120182 ||| || ||||| ||||| ||| ||| |||| || | ||| || | | |||||| Sbjct 644 TTGTTTTAAATCGTAGTTACAATCTTCAGTACTCATATTGATACCTTCCTGAAGGAAGAA 585 Query 120183 GATAACTTTAGGAAACACAGGAGTTACCCTATCTTTTCCTAATCCTTGTTTGTGCACCAT 120242 | |||||||||||| || || || | | ||| |||||||||||| || || || Sbjct 584 CACAACTTTAGGAAATACGGGTGTAGCACCGTCTATTCCTAATCCTTTTTCATGAACATC 525 Query 120243 TAGGTAGTTTTTAGTGATCATTCTACCAAAAGCAGAGGTATCCAAACCTAAACTAATTGT 120302 | ||| || || |||||| | || || ||| ||| ||| ||||| ||||| || Sbjct 524 CAAGTATGATTCGGTAATCATTTTCCCGAACTTAGAAGTACTCAATCCTAAGCTAATAGT 465 Query 120303 TATAAAAGGTGACTGACCATTTACACTCATTAGA--GTGTTCACCTGGTAGATTAAAGTT 120360 | || |||| || ||| |||| | || || || ||||| ||||| | || | | Sbjct 464 GACGAATGGTGTTTGCCCA-TTAC-TTGATGTGATTGTATTCACTTGGTACAACAACGCT 407 Query 120361 TGCATTGCATCATAGACCTGTTTATCTACCATACGCATA-GCAATATCATAATCGCCAAC 120419 |||||||||||||| || | |||| || | | ||| ||| || | ||||| || Sbjct 406 TGCATTGCATCATAAACTTCTTTACGTA----ATGAATACTCAACATACTCATCGCTAAG 351 Query 120420 ATCGGCATATATTT----TATTAAAACTT--------GCTTT---AACGTATTGACTAAG 120464 || | | ||| | ||| | || | ||| || ||| | | Sbjct 350 ATTAAATTCTTTTTGTTGTTGTAATAGTTTTTGATAGGATTTCTCTACATATGGTTCCAA 291 Query 120465 CCCAGTATCAACATGTGCACAAGTTTGTCCACCATATTGGCTAGAAGCT---ACTGCTTG 120521 ||| ||||| |||| | ||| ||||| ||||| || ||| |||||| | Sbjct 290 ACCACGATCAATGTGTGGTAGGGATTGACCACCGTATTG---TGATGCTGAAACTGCTAG 234 Query 120522 AATAATTTGAGTTAGGACAGTAGTCGCTACACCGATAGATTTTGGTTTTTCAATATGTGC 120581 | ||||| ||||| | ||| | || || || ||| ||||| ||| ||||| Sbjct 233 TACTATTTGTGTTAGTATTGTACTTGCCACTCCAATACTATTTGGGGAACCAACTTGTGC 174 Query 120582 ATTACCAATACGGAAACCGTTCTCAAGCATATCTTGGTAATTTACCAGGCAACAATTAGT 120641 |||||||| ||||| || | | |||||||| ||||| || | || || || || Sbjct 173 GTTACCAATTTTAAAACCATTAGCTAACATATCTTCATAATTAACTAAACAGCAGTTGGT 114 Query 120642 TAAAGGTGAGAGTAAATAATCTAAATCGTGAATGTGACCATACCCACTTTTATGCCATT 120700 ||| || | | ||||||| || ||||| |||||||| ||| ||||||||| Sbjct 113 TAATGGACTAATATAGTAATCTAGGTCATGAATATGACCATATCCATCAGTATGCCATT 55 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474991898656320