Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq6063 98.7 1e-15 seq35470 96.9 3e-15 seq1625 82.4 7e-11 >seq6063 Length=776 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | || || |||||||| |||||||| || || |||||||| ||||||||| Sbjct 476 CCGGCGAAGATCAGGCGCTGCTGCTCGGGAGGAATTCCCTCCTTGTCCTGAATCTTTTGC 535 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | ||||| |||||| | | | || || |||| ||| | ||| || ||||| ||| Sbjct 536 TTGACGTTCTCAATCGTGTCAGAGAGTTCAACCTCGAGGGTTATGGTCTTTCCGGTGAGA 595 Query 133641 GTTTTTACGAAAATCTGCATGGCT 133664 || || ||| | || | |||| || Sbjct 596 GTCTTCACGTAGATTTTCATGACT 619 >seq35470 Length=1843 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 ||||| |||||||| ||||||||||| || |||||||| |||||| ||||| | | Sbjct 109 ATGAGACGCTGCTGATCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTC 168 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 |||| |||||| | | ||| || || | |||| ||| || ||||| || || || ||| Sbjct 169 TCAATCGTGTCCGAAGCCTCGACCTCCAAAGTGATGGTCTTTCCGGTGAGTGTCTTAACG 228 Query 133650 AAAATCTGCAT 133660 || |||||||| Sbjct 229 AAGATCTGCAT 239 >seq1625 Length=222 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | || || |||||||||||||||||||| || |||||||| ||||| | Sbjct 108 CCAGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTGGCC 167 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || | | ||||| |||||||| || ||| || || | |||| ||| ||||||| Sbjct 168 TTCACGTTCTCAATCGTGTCGGAGGCCTCGACTTCCAAAGTGATGGTCTTGCCGG 222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482974928910640