Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_027331.1 Length=170341 Score E Sequences producing significant alignments: (Bits) Value seq41502 120 3e-22 seq10303 95.1 1e-14 >seq41502 Length=4250 Score = 120 bits (132), Expect = 3e-22 Identities = 316/476 (66%), Gaps = 11/476 (2%) Strand=Plus/Minus Query 63883 TCCTCGTGTAAAAGGTTTCAGGAGATCTTGGTTTTCTTTAAAGCGATTGATGTAGTCATT 63942 ||||| | | |||||||| | | || ||| ||| |||| || ||||| | || |||| Sbjct 1860 TCCTCTT-TGAAAGGTTTAATCATATGTTGATTTGCTTTGAAACGATTCACATAATCATC 1802 Query 63943 TACACCAAGCTTCTTGTACATTGCAATGATTGTGTGGTAGTTTTCCCAAGCATATTCGCG 64002 |||||| || ||||| ||||| | | | | | |||| | |||| |||| || Sbjct 1801 CTCACCAAACTCACGGTACAAAGCAATTACTTTATAGAAGTTCTGATAAGCGAATTCACG 1742 Query 64003 GAACCAACCACTCGTAATTGAAGTACAAACCTTCTCCAAAGCCATCATAAAGGAATGTTC 64062 |||||||||||| ||||| |||||| || || | |||||| | || | || | Sbjct 1741 GAACCAACCACTAGTAATACTAGTACAGACTTTAGATAGAGCCATAACGAATGCTTGCTT 1682 Query 64063 AGATGAAACATTTTTGA-AATCGTTTGGAATTTGAGAACGTTCCAACGCTAATACGCAAG 64121 || || | |||| ||||| || ||| | ||||||| | || | ||| |||| Sbjct 1681 AGGTG----TTGGTTGATAATCGAACGGGATTAGGCAACGTTCTAGTGCAAGTACACAAG 1626 Query 64122 TTTCTTCGTACACACCAGCCAATTGGATTTCTTTAGGCAA-TTCAAAGAATTTCTTCTTA 64180 | |||||||| || || |||| | || | | || || | ||||| |||| ||| Sbjct 1625 TCTCTTCGTATACTCCTAGTAATT-GTTTAATCTCGGAAAGAGCGAAGAACTTCTCTTTA 1567 Query 64181 TCAGTCATTACCTGAGACCCATCTTTCATGTAGAAAGTATAAGCTGGACGATCCATCAAT 64240 || |||||| | | |||||||||||||| | || || || |||||| | Sbjct 1566 TCTACCATTACTTCCGCACCATCTTTCATGTACTCTTTGTACGCAGGTGCATCCATAATA 1507 Query 64241 GCAACCGCTTCATGAATTGTATCATGATCGTAGGTGTA---GATATCGTCTTTAAAGAAT 64297 |||| ||| |||||||| |||||||| || ||| | || | || |||| ||||| Sbjct 1506 GCAATCGCCTCATGAATAGTATCATGGTCATAGATATAACCCACTTCATCTTGGAAGAAG 1447 Query 64298 TTGTCTTTTGTCGTATCCAATACCGGATGAGCATAGCTCAAAGTTTCTTTTTCGCG 64353 | ||||| | ||| | ||| ||||| | || | | |||||||| || || Sbjct 1446 GTTTCTTTGGATTGATCAAGTACTGGATGGGTGTAATTATACGTTTCTTTCTCACG 1391 >seq10303 Length=766 Score = 95.1 bits (104), Expect = 1e-14 Identities = 134/184 (73%), Gaps = 12/184 (7%) Strand=Plus/Plus Query 143131 TTTGAAGACCATAGTCCAGGTGACGAATTCGGTT---TTCATCTACGCCTTTGTTGTTCT 143187 || |||| | |||||| ||||||| ||||| |||| | |||||||| |||| Sbjct 519 TTGGAAG-CAATAGTCACTTTGACGAACACGGTTAAATTCAGTT---CCTTTGTTATTCT 574 Query 143188 TAAGTACGAGGAGATTCTCGACTTCAAGATGCCAAATTGGATAGTACAATGTTGCGGCAC 143247 | ||||| | || || || | ||| |||||||| | ||| ||| | ||||| |||| Sbjct 575 TTAGTACTACAAGGTTTTCAAATTCTAGATGCCATAGTGGGAAGTGAATAGTTGCTGCAC 634 Query 143248 CACCACGAACTCCGCCTTGGGAACAGGATTTAACTGCAGTTTGGAAGTGTTTCCAGAAAG 143307 |||||||||| || ||||| ||||| ||||||| |||||| ||| || | ||||| Sbjct 635 CACCACGAACGCCACCTTGTGAACATGATTTAA---CAGTTT--TAGTACTTGCTGAAAG 689 Query 143308 GAAT 143311 |||| Sbjct 690 GAAT 693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544460566816560