Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq44731 105 8e-18 seq2257 100 3e-16 >seq44731 Length=5866 Score = 105 bits (116), Expect = 8e-18 Identities = 142/194 (73%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 94734 AGTTCCGT-GTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCG 94791 |||||| | |||| | ||||| || || ||||| |||||||| | | || ||| | Sbjct 3616 AGTTCCCTTGTATCAAGAAGAAGGCCGACTGGGCGCTGAAGTGGATCGCCGACGAAGAGG 3557 Query 94792 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 94851 | | |||| || ||| || || ||||||| || || ||||| || |||||||| || Sbjct 3556 CCT-CCTTCGCCGAGAGAGTCATCGCATTCGCCGCCGTCGAGGGAATATTCTTCTCCGGG 3498 Query 94852 TCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 94911 |||||| | | || | ||||||||||||||| || || ||||| || ||| | ||| Sbjct 3497 TCCTTCGCCTCCATCTTTTGGCTCAAGAAGCGCGGGCTTATGCCCGGGCTCACCCAGTCC 3438 Query 94912 AACGAGCTTATCTC 94925 |||||||| ||||| Sbjct 3437 AACGAGCTCATCTC 3424 >seq2257 Length=6083 Score = 100 bits (110), Expect = 3e-16 Identities = 162/229 (71%), Gaps = 7/229 (3%) Strand=Plus/Plus Query 105374 GGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATAT 105432 || || ||||| || | ||||| ||| | || |||||| ||||||||||| || || Sbjct 3658 GGACCCTATGAGACTTACGAGGGCAGTCCCGTCTC-CAAGGGAGTGCTTCAATTCGACAT 3716 Query 105433 GTGGGAAGGTGAGACCAAGCTTC----ACTACGACTGGGAAGCTCTCAAGGAACGCATCA 105488 |||| | | |||| || | | ||||||||| |||| | ||| |||| Sbjct 3717 GTGGAACAACGTGACCCT-CTCCGGAGAGGTCGACTGGGACTCTCTTAGGGAGAAGATCA 3775 Query 105489 AGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCAC 105548 || || | || | || |||||||||||| |||| || ||||| || ||||| || |||| Sbjct 3776 AGAAGTACGGAGTGCGCAACAGTCTCCTCCTGGCACCGATGCCGACGGCCTCTACTGCAC 3835 Query 105549 AAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 105597 | ||| | || || || |||| | |||| |||||||| | |||||||| Sbjct 3836 AGATCCTCGGAAACAACGAATCCATTGAGCCCTACACCTCCAACATCTA 3884 Score = 86.0 bits (94), Expect = 7e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 104602 GGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTT 104661 |||| | |||| |||| || ||||| ||||||||||||||| | |||||| | | | Sbjct 2690 GGGAGCCTTCGCCATCTACCTCGAGCCCTGGCACGCGGATATCTTTGAGTTCGTGTCGCT 2749 Query 104662 GCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGAT 104721 | | ||| || ||||||| | || ||||||||| ||| || |||||| | Sbjct 2750 GAGGAAGAACACTGGGCCTGAGGAGGAGAGGGCCCGCGATCTGTTCCTGGCCCTCTGGGT 2809 Query 104722 TCCAGATCTCTTCATGAAGAGAGTT 104746 ||| ||||||||||||||||| ||| Sbjct 2810 TCCGGATCTCTTCATGAAGAGGGTT 2834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582722843982640