Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq17487 104 7e-17 seq72756 100 9e-16 seq35470 100 9e-16 seq6063 91.5 4e-13 >seq17487 Length=3481 Score = 104 bits (114), Expect = 7e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||| ||||| ||||| |||||||| || |||||||| || || ||||| || ||||| Sbjct 156 CCAGCGAAGATCAGACGCTGCTGATCGGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCC 215 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || || | || || | ||||| || || || | ||||||||||| || Sbjct 216 TTGACATTTTCGATGGTGTCGGAGGCCTCAACCTCGAGAGTGATAGTCTTTCCGGTGAGA 275 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| || || || ||||| Sbjct 276 GTTTTGACGAAGATTTGCAT 295 >seq72756 Length=1554 Score = 100 bits (110), Expect = 9e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || || ||||| || || |||||||| ||||||||||| || |||||||| || || || Sbjct 190 CCGGCGAAGATCAGGCGCTGCTGATCGGGAGGAATTCCCTCCTTATCCTGGATCTTGGCC 131 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || || | || || | || || || || |||| ||||||||||| ||| Sbjct 130 TTCACATTCTCGATGGTGTCGGAGGCCTCCACCTCGAGGGTAATGGTCTTTCCGGTGAGT 71 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || || || || ||||| Sbjct 70 GTCTTGACGAAGATTTGCAT 51 >seq35470 Length=1843 Score = 100 bits (110), Expect = 9e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || |||||||| ||||| |||||||| ||||| ||||| || || ||||| || || || Sbjct 100 CCGGCAAAGATGAGACGCTGCTGATCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCC 159 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || || ||||||| || || | || || || | || | ||||||||||| ||| Sbjct 160 TTGACGTTCTCAATCGTGTCCGAAGCCTCGACCTCCAAAGTGATGGTCTTTCCGGTGAGT 219 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || || || |||||||| Sbjct 220 GTCTTAACGAAGATCTGCAT 239 >seq6063 Length=776 Score = 91.5 bits (100), Expect = 4e-13 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAAT-TTTAGC 140656 || || ||||| || || ||||| || ||||||||||| || || |||||||| ||| || Sbjct 476 CCGGCGAAGATCAGGCGCTGCTGCTCGGGAGGAATTCCCTCCTTGTCCTGAATCTTTTGC 535 Query 140657 TTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 || || || ||||||| ||||| ||||||| || || || | ||||||||||| || Sbjct 536 -TTGACGTTCTCAATCGTGTCAGAGAGTTCAACCTCGAGGGTTATGGTCTTTCCGGTGAG 594 Query 140717 TGTTTTTAC 140725 || || || Sbjct 595 AGTCTTCAC 603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1513821904060158