Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2257 163 3e-35 >seq2257 Length=6083 Score = 163 bits (180), Expect = 3e-35 Identities = 206/279 (74%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 79305 CTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTC 79364 ||||||| ||| ||| ||| || ||||||||| | |||||||||||| |||||| | Sbjct 2901 CTCCCCA--GACGTCGTCCAGTCCGGGGCACTCGCGGGGGCACATCAGGGCCCAGTCGGC 2844 Query 79365 GTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCG 79424 ||| | | |||| ||| ||||||||| ||||| | ||| |||||| ||| || ||||| Sbjct 2843 GTCATCCGAAACCCTCTTCATGAAGAGATCCGGAACCCAGAGGGCCAGGAACAGATCGCG 2784 Query 79425 GCAACGCATCTCCTCGTC--GCCCTG-GTTCAGACGCAGCTCGAGAAAGTCCATGATGTC 79481 | | ||||||| || |||| | |||| | |||| | || || | ||| || Sbjct 2783 G---GCCCTCTCCTCCTCAGGCCCAGTGTTCTTCCTCAGCGACACGAACTCAAAGATATC 2727 Query 79482 GGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTT 79541 |||||||| ||||| || ||||||||||| | ||| |||||| ||| ||||| | Sbjct 2726 CGCGTGCCAGGGCTCGAGGTAGATGGCGAAGGCTCCCGGACGCTTGTTGCCTCCCTGATC 2667 Query 79542 GACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGG 79580 ||||| || || ||||||||| | || ||||||||||| Sbjct 2666 CACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATGGG 2628 Score = 156 bits (172), Expect = 5e-33 Identities = 209/286 (73%), Gaps = 6/286 (2%) Strand=Plus/Plus Query 19422 TCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAAC 19481 |||| |||||||| |||| ||||||||| || | ||||| | ||||| ||| ||| | Sbjct 2626 TCCCCATGCTCCGTGTCTACAACAACACCGCTCGCTACGTGGATCAGGGAGGCAACAAGC 2685 Query 19482 GCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCG 19541 | ||| | |||||||||||||||||||| ||||||||||| || | || ||| | Sbjct 2686 GTCCGGGAGCCTTCGCCATCTACCTCGAGCCCTGGCACGCGGATATCTTTGAGTTCGTGT 2745 Query 19542 AACTGCGCCTGAAC-CAGGG--TGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCT 19598 ||| | |||| | ||| ||| ||||||| | || ||||| || ||| |||| Sbjct 2746 CGCTGAGGAAGAACACTGGGCCTGAGGAGGAGA-GGGC--CCGCGATCTGTTCCTGGCCC 2802 Query 19599 TGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGT 19658 | ||| ||||||| || |||||| ||| |||| | | |||| || ||| |||||||| Sbjct 2803 TCTGGGTTCCGGATCTCTTCATGAAGAGGGTTTCGGATGACGCCGACTGGGCCCTGATGT 2862 Query 19659 GCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTT 19704 |||| | ||| ||||| || || |||||||| || |||| ||| Sbjct 2863 GCCCCCGCGAGTGCCCCGGACTGGACGACGTCTGGGGAGAGGAGTT 2908 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 20606 ATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATC 20665 ||||| | || ||||||| | |||| ||| || ||||| | | |||||| |||| Sbjct 4109 ATCCCTCCTAAGATCAAGGAGCTGTACAAGACTGTGTGGGAGTTGTCGCAGAAGCACATC 4168 Query 20666 ATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAA 20718 ||||| ||||| ||||||||||| |||| |||||||||||| ||||||||||| Sbjct 4169 ATCGAGATGGCTGCCGATCGCGGAGCCTTCATCGACCAGTCTCAGTCGCTCAA 4221 Score = 89.7 bits (98), Expect = 6e-13 Identities = 148/212 (70%), Gaps = 9/212 (4%) Strand=Plus/Minus Query 78775 GACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCC 78834 |||||||| ||||||||||| | | | |||||||||| ||||||| || || ||| Sbjct 3593 GACTCGAGA---GCCGCGTGGTAGATAACTTCGAAGATGCGTTTGTTGAAATCACGGGCC 3537 Query 78835 TTGGTCTCGTCGAACGAAAGGCCGAGCAT---CATGAAGACATCGGCCAGGCCCTGGACG 78891 | | | | ||| | || | |||| ||||||| |||||||| ||||| || Sbjct 3536 TCGTTTGAGGTGAAGG---GGTAGCGCATAAGCATGAAGGTGTCGGCCAGACCCTGCACT 3480 Query 78892 CCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAG 78951 || | | | || || ||||||||||||||| |||||| ||||| ||||||| || Sbjct 3479 CCCAGACCAATAGGGCGGTGGCGCATGTTGGAACGACGGGCCTCCTCGATCGGGTAGTAG 3420 Query 78952 TTCCGATCGATGACGCGGTTCAGGTTACGCGT 78983 || ||||||| |||||| || || || Sbjct 3419 TTGATGTCGATGATCTTGTTCAGATTGCGGGT 3388 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 || |||| |||||| ||||| ||| || ||||| || ||||| ||| || |||||| Sbjct 3271 GAGGCCAAGTTGCAAACGGCGACCTCATCGGGGCTGGAGTACTCGACGATCTCAGTGCAC 3212 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 | || || |||||||||| || | ||||| |||||||||||| ||| ||||| ||| Sbjct 3211 AGGTTGGAGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCATCC 3152 Query 79177 T 79177 | Sbjct 3151 T 3151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548018881863840