Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq17487 138 1e-27 seq72756 120 3e-22 seq35470 107 2e-18 seq6063 93.3 5e-14 seq1625 89.7 6e-13 >seq17487 Length=3481 Score = 138 bits (152), Expect = 1e-27 Identities = 117/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||| || || ||||| |||||||| ||||| ||||||||| | Sbjct 295 ATGCAAATCTTCGTCAAAACTCTCACCGGAAAGACTATCACTCTCGAGGTTGAGGCCTCC 236 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | |||| | |||||||| || |||||||||||||||||||| || || ||| Sbjct 235 GACACCATCGAAAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCCGATCAG 176 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 |||||||| || || |||||| || Sbjct 175 CAGCGTCTGATCTTCGCTGGTTAG 152 >seq72756 Length=1554 Score = 120 bits (132), Expect = 3e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||| ||||| ||||| || ||||| ||| | Sbjct 51 ATGCAAATCTTCGTCAAGACACTCACCGGAAAGACCATTACCCTCGAGGTGGAGGCCTCC 110 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||||| || || ||||| ||||||||||||||||| || ||| Sbjct 111 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCAG 170 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 ||||| || || || || ||| || Sbjct 171 CAGCGCCTGATCTTCGCCGGTTAG 194 >seq35470 Length=1843 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||| ||||| || ||| | ||||| ||| | Sbjct 239 ATGCAGATCTTCGTTAAGACACTCACCGGAAAGACCATCACTTTGGAGGTCGAGGCTTCG 180 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||||| || || ||||||||||||||||| ||||| || ||| Sbjct 179 GACACGATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGATCAG 120 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 |||||||| || ||||| ||| || Sbjct 119 CAGCGTCTCATCTTTGCCGGTTAG 96 >seq6063 Length=776 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||| |||||| || ||||| || ||||| ||||| || || || |||||||| | Sbjct 615 ATGAAAATCTACGTGAAGACTCTCACCGGAAAGACCATAACCCTCGAGGTTGAACTCTCT 556 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||| || |||||||||||||||||||||||||| || ||| Sbjct 555 GACACGATTGAGAACGTCAAGCAAAAGATTCAGGACAAGGAGGGAATTCCTCCCGAGCAG 496 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 ||||| || || || || ||| || Sbjct 495 CAGCGCCTGATCTTCGCCGGTTAG 472 >seq1625 Length=222 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 27431 CCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTA 27490 |||||||||| || ||| | || || ||| | || | |||| || ||||||| | Sbjct 222 CCGGCAAGACCATCACTTTGGAAGTCGAGGCCTCCGACACGATTGAGAACGTGAAGGCCA 163 Query 27491 AAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 | ||||||||||||||||| || ||||| ||||||||||| || || || |||||| || Sbjct 162 AGATTCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGCCTGATCTTCGCTGGTTAG 104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569784388460320