Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_028940.1 Length=170286 Score E Sequences producing significant alignments: (Bits) Value seq41502 120 3e-22 >seq41502 Length=4250 Score = 120 bits (132), Expect = 3e-22 Identities = 267/397 (67%), Gaps = 23/397 (6%) Strand=Plus/Minus Query 66507 GAATGGTTTAACCATATGTTGATTGTTTTTATAACGATTGATGTAATCATTAACACCTAA 66566 ||| ||||||| |||||||||||| ||| ||||||| | ||||||| |||| || Sbjct 1852 GAAAGGTTTAATCATATGTTGATTTGCTTTGAAACGATTCACATAATCATCCTCACCAAA 1793 Query 66567 AGATTTGTACATAGCAAGAACTTTGAAATAGTTTTCCCATGCATATTCACGGAACCAGCC 66626 ||||| ||||| ||||| | |||| | | || ||||||||||||| || Sbjct 1792 CTCACGGTACAAAGCAATTACTTTATAGAAGTTCTGATAAGCGAATTCACGGAACCAACC 1733 Query 66627 GGATGTGATGCTTGTACATACTTTTTCAAGAGCCATCAAAAAACTATGTTCTGAACTAAC 66686 || || || ||||| ||||| |||||||| | || || | || || | Sbjct 1732 ACTAGTAATACTAGTACAGACTTTAGATAGAGCCATAACGAA----TGCT-TG--CTTAG 1680 Query 66687 ATTTTGGAAGTTGTTA-------GGAATCTGAGAACGTTCTAATGCTAGTACACATGTTT 66739 | |||| ||| || || || | ||||||||| ||| |||||||| || | Sbjct 1679 GTGTTGG---TTGATAATCGAACGGGATTAGGCAACGTTCTAGTGCAAGTACACAAGTCT 1623 Query 66740 CTTCATATACCCCGGCTAATT---TAATTTCTTCAGGAAGAGAAAAGAATTTTTCTTTAT 66796 |||| ||||| || ||||| |||| || | ||||| ||||| || ||||||| Sbjct 1622 CTTCGTATACTCCTAGTAATTGTTTAATCTCG---GAAAGAGCGAAGAACTTCTCTTTAT 1566 Query 66797 CTGTTAAAACTTGGCTTCCATCTTTCATGTAAAATTTATAAGCTGGTTGTTGAGTTAAAG 66856 || | |||| |||||||||||||| ||| || || ||| | | | || Sbjct 1565 CTACCATTACTTCCGCACCATCTTTCATGTACTCTTTGTACGCAGGTGCATCCATAATAG 1506 Query 66857 CAACTGCTTCATGAATTGTATCATGGTCATATGTATA 66893 ||| || |||||||| |||||||||||||| |||| Sbjct 1505 CAATCGCCTCATGAATAGTATCATGGTCATAGATATA 1469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544284729145760