Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1981 116 3e-21 >seq1981 Length=2930 Score = 116 bits (128), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 6922 CTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTC 6981 |||||| |||||||| || ||||| || || | | ||| || ||| || | ||||| Sbjct 1943 CTGGAATCCGTAGACGGGTCCCAAATCACCGACTTTGCGATCTGTGAAGCCTTGTTTGTC 2002 Query 6982 CAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGG--GACGAGAGCTCC 7039 || || || | || |||| || ||||||||||| || ||| | | |||| | Sbjct 2003 GAGGAACTCCCTCGATCCGTTCGCATCCCAGATCTTGACTCCCTTGTCGTGGAGACGT-- 2060 Query 7040 TTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTAC 7099 ||| ||| ||| | || ||| |||||||| ||||||||| ||||| || |||||||| Sbjct 2061 TTGCTGTCGGTGTCTCCTTTCATGAACCACAACAGCTCCTCCACCACTCCTTTCCAGTAG 2120 Query 7100 ACACGTTTCGTCGTCAGCAGCGGAA 7124 || || |||||||||||||| |||| Sbjct 2121 ACTCGCTTCGTCGTCAGCAGAGGAA 2145 Score = 116 bits (128), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 34221 TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGT 34280 |||| |||||||||||||| || || |||||||| || ||||| ||||||||| |||||| Sbjct 2145 TTCCTCTGCTGACGACGAAGCGAGTCTACTGGAAAGGAGTGGTGGAGGAGCTGTTGTGGT 2086 Query 34281 TCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTC--CCGGGGGGTGAAGATCTGGGA 34338 || ||| || | ||| ||| ||| | |||| | | ||| || ||||||||||| Sbjct 2085 TCATGAAAGGAGACACCGACAGCAA--ACGTCTCCACGACAAGGGAGTCAAGATCTGGGA 2028 Query 34339 CGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGA 34398 || |||| || | || || || ||||| | || ||| || ||| | | || || Sbjct 2027 TGCGAACGGATCGAGGGAGTTCCTCGACAAACAAGGCTTCACAGATCGCAAAGTCGGTGA 1968 Query 34399 CTTGGGCCCGGTCTACGGGTTCCAG 34423 ||||| || |||||||| |||||| Sbjct 1967 TTTGGGACCCGTCTACGGATTCCAG 1943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447848956381920