Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq6063 136 9e-27 seq17487 127 5e-24 seq72756 118 2e-21 seq35470 100 7e-16 >seq6063 Length=776 Score = 136 bits (150), Expect = 9e-27 Identities = 107/128 (84%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| ||||| || || || ||||||| ||| ||||||||||| |||||||| Sbjct 476 CCGGCGAAGATCAGGCGCTGCTGCTCGGGAGGAATTCCCTCCTTGTCCTGAATCTTTTGC 535 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||| || || ||||||||| |||||||||||| || || |||||||| |||||| Sbjct 536 TTGACGTTCTCAATCGTGTCAGAGAGTTCAACCTCGAGGGTTATGGTCTTTCCGGTGAGA 595 Query 211095 GTCTTTAC 211102 ||||| || Sbjct 596 GTCTTCAC 603 >seq17487 Length=3481 Score = 127 bits (140), Expect = 5e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| || || || || || || |||| ||| ||||||||||||||||| Sbjct 156 CCAGCGAAGATCAGACGCTGCTGATCGGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCC 215 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || |||||||||||||| ||| ||||||||||||||||| |||||||| |||||| Sbjct 216 TTGACATTTTCGATGGTGTCGGAGGCCTCAACCTCGAGAGTGATAGTCTTTCCGGTGAGA 275 Query 211095 GTCTTTACAAACACCTGCAT 211114 || || || || | ||||| Sbjct 276 GTTTTGACGAAGATTTGCAT 295 >seq72756 Length=1554 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| ||||| || || || ||||||| ||| ||||| ||||||||||| Sbjct 190 CCGGCGAAGATCAGGCGCTGCTGATCGGGAGGAATTCCCTCCTTATCCTGGATCTTGGCC 131 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 ||||| || ||||||||||| ||| || |||||||| || || |||||||| ||||| Sbjct 130 TTCACATTCTCGATGGTGTCGGAGGCCTCCACCTCGAGGGTAATGGTCTTTCCGGTGAGT 71 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | ||||| Sbjct 70 GTCTTGACGAAGATTTGCAT 51 >seq35470 Length=1843 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || ||||| || || || || || ||||| | ||| ||||||||||||||||| Sbjct 100 CCGGCAAAGATGAGACGCTGCTGATCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCC 159 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||| || || ||||| || || ||||| | |||||| |||||||| ||||| Sbjct 160 TTGACGTTCTCAATCGTGTCCGAAGCCTCGACCTCCAAAGTGATGGTCTTTCCGGTGAGT 219 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 220 GTCTTAACGAAGATCTGCAT 239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158056157259890