Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq56366 120 7e-22 seq17487 109 1e-18 seq72756 91.5 4e-13 seq1625 87.8 4e-12 >seq56366 Length=1723 Score = 120 bits (132), Expect = 7e-22 Identities = 204/293 (70%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 7429 AAGGAACTGGAAACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATA 7488 ||||| | | ||| |||||||| || |||||| | || || || | ||||||| Sbjct 87 AAGGATATTGGAACTTTATATTTCATTTTTGGTTTATGATCAGGAATGGTTGGTACTAGT 146 Query 7489 TTTTCTATGATTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAAT 7548 || || | ||||| | |||||||||||| ||||||| || | || | || ||| Sbjct 147 TTATCATTAATTATTCGTTTAGAATTAGCTAAACCGGGTT-TC---TTTTTA--GGAAAT 200 Query 7549 AGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTT 7608 | || | || ||| ||||||||| || ||||| || | || ||||||||| | || Sbjct 201 GGTCAGTTATATAACTCTATTATTACAGCTCATGCTATTTTAATAATTTTCTTTATAGTA 260 Query 7609 ATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCT 7668 ||||| || || || || || || |||||| | | || ||||| | || ||||| Sbjct 261 ATGCCCAGAATAATTGGTGGATTTGGTAATTGAATGTTACCATTAATATTGGGGGCTCCC 320 Query 7669 GATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTC 7721 |||||| |||||| | | || ||| |||| ||||||||| |||| |||| Sbjct 321 GATATGAGATTTCCACGTTTAAATAATTTAAGATTTTGATTATTACCTACTTC 373 >seq17487 Length=3481 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||||||||| || || || || ||||| ||||| || |||||||| |||||||| | Sbjct 156 CCAGCGAAGATCAGACGCTGCTGATCGGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCC 215 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| |||||||||||| |||| || || || | ||||| ||||| || || | | Sbjct 216 TTGACATTTTCGATGGTGTCGGAGGCCTCAACCTCGAGAGTGATAGTCTTTCCGGTGAGA 275 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | ||| | |||||| Sbjct 276 GTTTTGACGAAGATTTGCAT 295 >seq72756 Length=1554 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| || || || || ||||| ||||| || ||||| || |||||||| | Sbjct 190 CCGGCGAAGATCAGGCGCTGCTGATCGGGAGGAATTCCCTCCTTATCCTGGATCTTGGCC 131 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| ||||||||||| |||| ||||| || | || || ||||| || || | Sbjct 130 TTCACATTCTCGATGGTGTCGGAGGCCTCCACCTCGAGGGTAATGGTCTTTCCGGTGAGT 71 Query 225694 GTTTTTATGAACACTTGCAT 225713 || || | ||| | |||||| Sbjct 70 GTCTTGACGAAGATTTGCAT 51 >seq1625 Length=222 Score = 87.8 bits (96), Expect = 4e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||||||||| || || || |||||||| || ||||| |||||||| || ||||| | Sbjct 108 CCAGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTGGCC 167 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCC 225686 ||||| || || ||||| |||| || || || || ||||| |||||||| Sbjct 168 TTCACGTTCTCAATCGTGTCGGAGGCCTCGACTTCCAAAGTGATGGTCTTGCC 220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191403801127484