Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1981 96.9 3e-15 >seq1981 Length=2930 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/205 (71%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 27523 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTC---GAAGCCCCTCTTG 27579 ||||| ||||| || ||||||| || || ||| || | || |||||| ||| Sbjct 1944 TGGAATCCGTAGACGGGTCCCAAATCACCGACTT---TGCGATCTGTGAAGCCTTGTTTG 2000 Query 27580 TCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCT 27639 || | || || || || ||||| || ||||||||||| || ||||| ||| ||| | Sbjct 2001 TCGAGGAACTCCCTCGATCCGTTCGCATCCCAGATCTTGACTCCCTTGTCGTGGAGACGT 2060 Query 27640 TTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAG 27699 ||| || ||| ||| | | |||||||| |||||||||||| || | ||||| || Sbjct 2061 TTGCTGTCGGTGTCTCCTTTCATGAACCACAACAGCTCCTCCACCACTCCTTTCCAGTAG 2120 Query 27700 ACCCTCTTGGTCGTGAGGAGGGGAA 27724 || | ||| ||||| || || |||| Sbjct 2121 ACTCGCTTCGTCGTCAGCAGAGGAA 2145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369174914414966