Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2257 118 1e-21 seq44731 102 1e-16 >seq2257 Length=6083 Score = 118 bits (130), Expect = 1e-21 Identities = 222/323 (69%), Gaps = 5/323 (2%) Strand=Plus/Minus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 ||||| || |||||||| || || |||| ||| ||||| || |||||||||| | | Sbjct 2911 TCAAACTCCTCTCCCCAGACGTCGTCCAGTCCGGGGCACTCGCGGGGGCACATCAGGGCC 2852 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 ||||| | || ||| ||| | ||||| |||||||| || | ||| || || | || Sbjct 2851 CAGTCGGCGTCATCCGAAACCCTCTTCATGAAGAGATCCGGAACCCAGAGGGCCAGGAAC 2792 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGA--AACTCCA 78102 ||||| |||| || | || ||| || || ||||| | || ||| | ||||| | Sbjct 2791 AGATCGCGGGCCCTCTCCTCCTCAGGCCCAGTGTTCTTCCTCAG--CGACACGAACTCAA 2734 Query 78103 TAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTC 78162 ||||| | ||||| || || || || || || | |||| || || || || |||| Sbjct 2733 AGATATCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAGGCTCCCGGACGCTTGTTGCCTC 2674 Query 78163 CCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAG 78222 ||||||| | || | |||||||| || || || | | ||| || || | ||||| | Sbjct 2673 CCTGATCCACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATGGGGATCAGTCCGTTCG 2614 Query 78223 ATGTTCCATTTGT-TCCAGAAAT 78244 | || || || || | |||||| Sbjct 2613 AGGTACCGTTGGTCTGAAGAAAT 2591 >seq44731 Length=5866 Score = 102 bits (112), Expect = 1e-16 Identities = 123/167 (74%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 48195 GTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAA 48254 ||||| |||||||| || || || || ||||||||||| || | ||||| || || || Sbjct 3445 GTGAGCCCGGGCATAAGCCCGCGCTTCTTGAGCCAAAAGATGGAGGCGAAGGACCCGGAG 3504 Query 48255 AAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGG---CTTCG 48311 |||||||| || || ||||| || |||||| | | |||||| || | || ||||| Sbjct 3505 AAGAATATTCCCTCGACGGCGGCGAATGCGATGACTCTCTCGGCGAAGGAGGCCTCTTCG 3564 Query 48312 TTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGG 48358 | | |||||| | ||||| || ||||||||||| | |||||| Sbjct 3565 TCGGCGATCCACTTCAGCGCCCAGTCGGCCTTCTTCTTGATACAAGG 3611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694028089599040