Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2257 102 1e-16 seq44731 96.9 5e-15 >seq2257 Length=6083 Score = 102 bits (112), Expect = 1e-16 Identities = 216/321 (67%), Gaps = 1/321 (0%) Strand=Plus/Minus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 ||||| || |||||||| || || |||| || || || || || ||||||| | | Sbjct 2911 TCAAACTCCTCTCCCCAGACGTCGTCCAGTCCGGGGCACTCGCGGGGGCACATCAGGGCC 2852 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 || || | || ||| ||||| ||||| |||||||| || | ||| || || | || Sbjct 2851 CAGTCGGCGTCATCCGAAACCCTCTTCATGAAGAGATCCGGAACCCAGAGGGCCAGGAAC 2792 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699 ||||| |||| || || ||| || || ||||| | || | |||||| | Sbjct 2791 AGATCGCGGGCCCTCTCCTCCTCAGGCCCAGTGTTCTTCCTCAGCGACACGAACTCAAAG 2732 Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759 ||||| | ||||| || || || || || || | | ||||| || || || |||||| Sbjct 2731 ATATCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAGGCTCCCGGACGCTTGTTGCCTCCC 2672 Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGAT 76819 ||||| | || | || ||||| || || || | | ||| || || | ||||| || Sbjct 2671 TGATCCACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATGGGGATCAGTCCGTTCGAG 2612 Query 76820 GTACCATTTGT-TCCAGAAAT 76839 ||||| || || | |||||| Sbjct 2611 GTACCGTTGGTCTGAAGAAAT 2591 >seq44731 Length=5866 Score = 96.9 bits (106), Expect = 5e-15 Identities = 122/167 (73%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 46684 GTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAA 46743 |||||||| ||||| || || ||||| ||||||||||| || | ||||| || || || Sbjct 3445 GTGAGCCCGGGCATAAGCCCGCGCTTCTTGAGCCAAAAGATGGAGGCGAAGGACCCGGAG 3504 Query 46744 AAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTA 46803 |||||||| || || || || |||||||||| | |||||| || | ||| || | Sbjct 3505 AAGAATATTCCCTCGACGGCGGCGAATGCGATGACTCTCTCGGCGAAGGAGGCCTCTTCG 3564 Query 46804 T---GAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGG 46847 | |||||| | | ||||| || ||||| ||||| | |||||| Sbjct 3565 TCGGCGATCCACTTCAGCGCCCAGTCGGCCTTCTTCTTGATACAAGG 3611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712276842779520