Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq72756 111 1e-19 seq17487 93.3 3e-14 seq35470 89.7 4e-13 >seq72756 Length=1554 Score = 111 bits (122), Expect = 1e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 ||||| ||||||| ||||||||||| | ||| | || ||||| ||| ||||| | Sbjct 190 CCGGCGAAGATCAGGCGCTGCTGATCGGGAGGAATTCCCTCCTTATCCTGGATCTTGGCC 131 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 |||| | | |||||||||| || |||||||| | ||||| |||||||| ||||| Sbjct 130 TTCACATTCTCGATGGTGTCGGAGGCCTCCACCTCGAGGGTAATGGTCTTTCCGGTGAGT 71 Query 44318 GTCTTCACGAAGATTTGCATG 44338 ||||| ||||||||||||||| Sbjct 70 GTCTTGACGAAGATTTGCATG 50 >seq17487 Length=3481 Score = 93.3 bits (102), Expect = 3e-14 Identities = 115/156 (74%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || || ||||||| |||||||||||| | || | || ||||| ||| ||||| | Sbjct 156 CCAGCGAAGATCAGACGCTGCTGATCGGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCC 215 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 || | || | |||||||||| || || ||||| | || || |||||||| ||||| Sbjct 216 TTGACATTTTCGATGGTGTCGGAGGCCTCAACCTCGAGAGTGATAGTCTTTCCGGTGAGA 275 Query 44318 GTCTTCACGAAGATTTGCATGATGTGAATGAAAATA 44353 || || |||||||||||||| |||| ||||||| Sbjct 276 GTTTTGACGAAGATTTGCAT-CGCTGAAAGAAAATA 310 >seq35470 Length=1843 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 ||||||||||| | |||||||||||| | ||| | || ||||| ||| ||||| || Sbjct 100 CCGGCAAAGATGAGACGCTGCTGATCGGGAGGGATTCCCTCCTTGTCCTGGATCTT-GGC 158 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 | | |||| | || ||||| | | || ||||||| || || |||||||| ||||| Sbjct 159 CTTGACGTTCTCAATCGTGTCCGAAGCCTCGACCTCCAAAGTGATGGTCTTTCCGGTGAG 218 Query 44317 GGTCTTCACGAAGATTTGCAT 44337 ||||| |||||||| ||||| Sbjct 219 TGTCTTAACGAAGATCTGCAT 239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359666672557962