Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6063 147 5e-30 seq72756 122 2e-22 seq17487 122 2e-22 seq35470 104 6e-17 >seq6063 Length=776 Score = 147 bits (162), Expect = 5e-30 Identities = 114/136 (84%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||| | |||||| |||||||| ||||| || || ||||||||||| ||| ||| |||| Sbjct 611 AAATCTACGTGAAGACTCTCACCGGAAAGACCATAACCCTCGAGGTTGAACTCTCTGACA 552 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 | || ||||||||||| ||||||||||||||||| || ||||| ||||| || ||||| | Sbjct 551 CGATTGAGAACGTCAAGCAAAAGATTCAGGACAAGGAGGGAATTCCTCCCGAGCAGCAGC 492 Query 178045 GACTTATCTTCGCCGG 178060 | || ||||||||||| Sbjct 491 GCCTGATCTTCGCCGG 476 >seq72756 Length=1554 Score = 122 bits (134), Expect = 2e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| ||||| || || |||||||||||||| ||| ||| Sbjct 54 CAAATCTTCGTCAAGACACTCACCGGAAAGACCATTACCCTCGAGGTGGAGGCCTCCGAC 113 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| ||||| || || ||||| ||||| || ||||| Sbjct 114 ACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCAGCAG 173 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||||||||| Sbjct 174 CGCCTGATCTTCGCCGG 190 >seq17487 Length=3481 Score = 122 bits (134), Expect = 2e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||||||||| ||||| || ||||| |||||||| || ||| ||| Sbjct 292 CAAATCTTCGTCAAAACTCTCACCGGAAAGACTATCACTCTCGAGGTTGAGGCCTCCGAC 233 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || ||||| || || || ||||| Sbjct 232 ACCATCGAAAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCCGATCAGCAG 173 Query 178044 CGACTTATCTTCGCCGG 178060 || || |||||||| || Sbjct 172 CGTCTGATCTTCGCTGG 156 >seq35470 Length=1843 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| ||||| || ||||| | ||||| || || ||| Sbjct 236 CAGATCTTCGTTAAGACACTCACCGGAAAGACCATCACTTTGGAGGTCGAGGCTTCGGAC 177 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||||||||| ||||| |||||||| || ||||||||||| || ||||| Sbjct 176 ACGATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGATCAGCAG 117 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||| ||||| Sbjct 116 CGTCTCATCTTTGCCGG 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202593212836484