Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq109 134 2e-26 seq126 98.7 1e-15 >seq109 Length=1818587 Score = 134 bits (148), Expect = 2e-26 Identities = 217/312 (70%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010 || || || |||||||| || |||||| || ||||||||| |||||||||| |||| Sbjct 200467 TCGAATTCTTCTCCCCAGCAATCGTCCAAACCGGGACATTCACGAGGACACATCAGCGAC 200408 Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 54070 || || || | | |||| ||||| || |||||||| ||||| ||||| | ||| Sbjct 200407 CAGTCGGTATCTTGTTCGACTCTCTTCATGAAAAGATCAGGGATCCACAGAGCCAGAAAG 200348 Query 54071 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 54130 ||||| | | | | || ||| || || |||||| | ||| | ||| | | Sbjct 200347 AGATCACGAGCACGCTCCTCTTCGGGACCAGTGTTCTTTCTCAGAGAGCAGAATTCAAAG 200288 Query 54131 ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCC 54190 ||||| | |||||||| || | ||| |||| | | ||||||| || || ||||||||| Sbjct 200287 ATATCTGCGTGCCACGGCTCGAGGTAGATGGCGAAAGCTCCAGGACGCTTATTTCCTCCC 200228 Query 54191 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 54250 || || | ||| | ||| || || || || || | | ||| ||||| | || || ||| Sbjct 200227 TGGTCGACGTAACGAGCAGTATTGTTGTATACCCGGAGCATGGGAATGAGTCCGTTCGAT 200168 Query 54251 GCACCATTGGTC 54262 | ||||| ||| Sbjct 200167 GTTCCATTTGTC 200156 Score = 104 bits (114), Expect = 3e-17 Identities = 173/246 (70%), Gaps = 8/246 (3%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| | ||| || | ||||||||||| || || || || | || | |||||| Sbjct 199913 GTTCCAGAATTGAAAAGAGTAGGAGAAGCATGTGTGAAGAATCTCTCGCTCATCAGATTG 199854 Query 54485 TACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 54543 || || ||||| || || ||||| | ||| |||||||| || ||||| | ||| | Sbjct 199853 TAGGTTTCGATGGCGCTGTTGATATCTTCCTTG-TGAATTCCGACCGCGACTCTCATCAG 199795 Query 54544 CATGTGCTGAGGTCT---TTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTC 54600 ||| || || ||||| | ||| || ||||||| | ||||| | |||||| || Sbjct 199794 CATCTGTTGGGGTCTCTCTGCAATGAGCTTGTTG---GTCTTCAGGAGGTAGGAGCGCTC 199738 Query 54601 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTT 54660 | ||| || || || |||||| |||| || |||||||| ||||| | ||| | ||||| Sbjct 199737 GAGAGTCTTGAATCCGAAATAGGTGTAGGAGAAGTCTCGATCGTAGACTATAGCGGAGTT 199678 Query 54661 GAGTTT 54666 ||||| Sbjct 199677 CAGTTT 199672 Score = 86.0 bits (94), Expect = 7e-12 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 53088 TCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAA 53147 |||| || || |||||||||| | |||| | | | | || ||||| || || | Sbjct 201414 TCTTCATGTCCTCATTCCATAGTCCGAGCTCGACAAGATCCTTGAGAAGATGTGGGTTTA 201355 Query 53148 CTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCA 53207 | | ||| || ||||| |||| || | ||| |||| || || ||| || || || | Sbjct 201354 CAATTTGGAAGTCTCCCGACAGCACACGACGACTGTATATGTTCGAGGTGTAGGGCTCAA 201295 Query 53208 CAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 53264 ||||| || ||||| | |||||||||||| || ||||| |||||||| |||| || Sbjct 201294 TGGACTCGTTGTTTCCAAGAATTTGAGCAGTCGAGGCAGTGGGCATAGGAGCCATCA 201238 >seq126 Length=3090016 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 || ||||| |||||||||||||| || ||||| ||||| || |||||||| | | |||| Sbjct 2638071 CTGTACATCTCCGAATGAATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGAAACGAGCC 2638012 Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542 |||| ||||| |||||| | | ||||| || | | || || || || ||||| ||| Sbjct 2638011 TCGGATATCTGGACTTCTTTGGAGAATCGCTCGACAAGGTTCTCGTTGACGATTCCATCA 2637952 Query 24543 CTGGCTGCAAAAAACGCCAATACA 24566 ||| || || || ||||| ||| Sbjct 2637951 GAGGCGGCGAAGAAGGCCAAAACA 2637928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720182489680