Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq126 98.7 8e-16 seq81 96.9 3e-15 seq109 82.4 6e-11 >seq126 Length=3090016 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 |||||| || || || | || |||| ||| | ||| |||||||| || ||||| ||||| Sbjct 1376327 GTTTCCTCCACGAAGACGCAGGACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTC 1376268 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | || || | | || || ||||| ||||| || | ||||| | ||||||||| Sbjct 1376267 GGAGAGAGTACGACCATCTTCTAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGG 1376208 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | |||||||||||| |||||| ||| || | ||| || || | ||| Sbjct 1376207 CGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCGATCGTGTCGGAAGCCTC 1376148 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 | || | ||| |||||||| || || | || ||||| || ||||||||| Sbjct 1376147 CACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGACGAAAATTTGCATT 1376096 >seq81 Length=934076 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | || || | ||| | ||| |||||||| |||||||| ||||| | Sbjct 596929 TTCCTCCACGAAGTCGCAGAACAAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGG 596870 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || || || | ||||||| |||||||| || | || |||||||||||||| || Sbjct 596869 ACAAAGTGCGGCCATCCTCCAATTGTTTGCCGGCGAAGATGAGTCTCTGCTGGTCTGGGG 596810 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||| ||||| |||||| ||||| | ||| || || | |||| || Sbjct 596809 GGATTCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCGATTGTGTC-CGAGGCTTCG 596751 Query 21127 -TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| | || |||||||| || || | || ||||| || || ||||| Sbjct 596750 ACTTCAAGAGTGATGGTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 596701 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | ||||| ||||| |||||||| ||||| | | Sbjct 595118 CCACCACGAAGTCGGAGGACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAC 595059 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || || | ||||||| |||||||| || | || |||||||||||||| ||| Sbjct 595058 AAAGTGCGGCCATCCTCCAATTGTTTGCCGGCGAAGATGAGTCTCTGCTGGTCTGGGGGA 594999 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG-T 21127 | || || ||||| |||||| || || | ||| || || | |||| || Sbjct 594998 ATTCCCTCTTTGTCCTGGATCTTGGCCTTGACATTCTCGATTGTGTC-CGAGGCTTCGAC 594940 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||| | ||| ||||||||||| || | ||||| || || || |||||| Sbjct 594939 TTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACGAAGATCTGCATT 594891 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || || || ||||| | ||||| | | ||||| ||||| || || Sbjct 595316 GTGGACTCCTTCTGGATATTGTAGTCAGAGAGGGTACGTCCATCCTCGAGCTGCTTTCCG 595257 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || | ||| |||||||| ||| | || |||||||| ||||||| ||| Sbjct 595256 GCGAAGATCAATCTTTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTTGCTTTG 595197 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| |||||| | ||| ||| | || |||||||| || || || || Sbjct 595196 ACGTTCTCGATGGTATCAGAAGCCTCGACTTCAAGTGTGATGGTCTTTCCCGTCAAAGTC 595137 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 595136 TTGACGAAGATCTGCAT 595120 >seq109 Length=1818587 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || || | ||| | ||| ||||||||||| ||||| ||||| ||||| | | ||| Sbjct 530508 AGGACGAGATGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCATCC 530449 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || ||||||||||| || || | |||||| ||||| Sbjct 530448 TCCAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCC 530389 Query 21084 GCGATCTT 21091 |||||| Sbjct 530388 TGGATCTT 530381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422258217059756