Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq126 197 1e-45 seq81 143 3e-29 seq109 129 6e-25 >seq126 Length=3090016 Score = 197 bits (218), Expect = 1e-45 Identities = 331/490 (68%), Gaps = 39/490 (8%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATT 116744 ||||||| || ||| |||| || ||||||||| | ||| |||| ||||| | | Sbjct 2637858 AGGTGGATCTCGGCAAAGACATGAAGGACTGGGAGGCCATGACCGACGACGAGAGATTCT 2637917 Query 116745 TCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGG 116804 ||||| | || ||||||| ||||||||| || || |||||||||||||| || | Sbjct 2637918 TCATCTCTCGTGTTTTGGCCTTCTTCGCCGCCTCTGATGGAATCGTCAACGAGAACCTTG 2637977 Query 116805 TCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGA 116864 ||||||| ||| | | || || ||| | ||||||| || | |||||||||||| || | Sbjct 2637978 TCGAGCGATTCTCCAAAGAAGTCCAGATATCCGAGGCTCGTTTCTTCTACGGCTTCCAAA 2638037 Query 116865 TCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCT 116924 ||||||| |||||| | || ||||| ||||| | || ||||| || || | ||| Sbjct 2638038 TCGCCATCGAGAACATTCATTCGGAGATGTACAGCAAGCTAATCGAAACCTATATCCGCG 2638097 Query 116925 CTTCGGAGGAGAAGCT---------------------------------------CCGTT 116945 | | | |||| | | |||| Sbjct 2638098 ATCCTGTCGAGAGGTTTGATTTCGCCTTATCTTACCTCAACTCATCATTCAGGAACCGTC 2638157 Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 | || ||||||||| | | || ||| |||| |||||||||| ||||| ||||||| Sbjct 2638158 TCTTCAACGCCATCTTCGAGTTTCCCTGCATCAAGAAGAAGGCCGATTGGGCTCTGCGCT 2638217 Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 |||| |||| | ||||| | |||| |||||| || | |||||||| || ||||||| Sbjct 2638218 GGATTGCCGACGACGAGGCTTCGTTCGCCGAGCGAGTGATTGCCTTCGCTGCTGTCGAGG 2638277 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 | ||||||| || ||| || || ||||| || ||||| ||||| || || || |||| Sbjct 2638278 GAATCTTCTTCTCCGGCTCATTTGCTGCCATCTTCTGGCTGAAGAAGCGTGGTCTTATGC 2638337 Query 117126 CCGGCCTGAC 117135 |||||||||| Sbjct 2638338 CCGGCCTGAC 2638347 Score = 141 bits (156), Expect = 1e-28 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | |||||||||||||||||| |||| |||||||| | Sbjct 1375556 ATGCAGATCTTCGTCAAGACTTTGACGGGCAAAACCATCACCCTCGAAGTCGAAGCTTCG 1375615 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| |||||| ||| || | ||||| || || || || ||||||| Sbjct 1375616 GACACGATTGAGAACG-TCAAGGCAAAGATCCAGGACAAGGAAGGAATTCCTCCGGACCA 1375674 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||| ||||| || || | || || ||| ||||| || Sbjct 1375675 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAAGATGGTCGTACTCTCTCTGACTATAA 1375734 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| ||| || ||||| || Sbjct 1375735 CATCCAGAAGGAAAGCACACTCCATCTCGT 1375764 Score = 136 bits (150), Expect = 4e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || || ||||| || ||||||||| |||| || || || | Sbjct 1376096 AATGCAAATTTTCGTCAAGACTCTGACGGGTAAGACCATCACCCTCGAGGTGGAGGCTTC 1376155 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | |||| |||| | || || | ||||| || |||||||| | |||| Sbjct 1376156 CGACACGATCGAGAACG-TCAAAGCCAAGATCCAGGACAAGGAAGGCATCCCGCCTGACC 1376214 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || || |||| ||| ||||| ||||| || || | || || ||| |||||||| Sbjct 1376215 AGCAGCGTCTTATCTTCGCCGGCAAGCAGCTAGAAGATGGTCGTACTCTCTCCGACTACA 1376274 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||||| | || || ||| | || |||| Sbjct 1376275 ACATCCAGAAGGAGTCTACTCTTCATTTGGTCCTGCG 1376311 >seq81 Length=934076 Score = 143 bits (158), Expect = 3e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| ||||| ||||| ||||| ||||||||| | || ||||||||| | Sbjct 594891 AATGCAGATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAAGTCGAAGCCTC 594950 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||||| || || | ||||||||||| || ||| | ||||| Sbjct 594951 GGACACAATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAGGGAATTCCCCCAGACCA 595010 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||||||| ||| |||||||| |||| || | ||||| | ||||||||| Sbjct 595011 GCAGAGACTCATCTTCGCCGGCAAACAATTGGAGGATGGCCGCACTTTGTCCGACTACAA 595070 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| |||||||| |||| || || Sbjct 595071 CATTCAGAAGGAATCCACCCTTCA 595094 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || |||||||| | || ||||||||| | Sbjct 596701 ATGCAGATCTTCGTCAAGACCCTTACTGGAAAGACCATCACTCTTGAAGTCGAAGCCTCG 596760 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | |||||||| || |||||| | ||||| Sbjct 596761 GACACAATCGAGAACG-TGAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGACCA 596819 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||||||| ||| |||||||| |||| || | ||||| | ||||||||| Sbjct 596820 GCAGAGACTCATCTTCGCCGGCAAACAATTGGAGGATGGCCGCACTTTGTCCGACTACAA 596879 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| ||||||||| | || || ||||| || |||| Sbjct 596880 CATTCAGAAGGAGTCTACTCTCCATCTTGTTCTGCG 596915 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | ||||| || |||||||| | || ||||| || | Sbjct 595120 ATGCAGATCTTCGTCAAGACTTTGACGGGAAAGACCATCACACTTGAAGTCGAGGCTTCT 595179 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| |||| | ||| || | ||||| ||||| || ||| | ||||| Sbjct 595180 GATACCATCGAGAACG-TCAAAGCAAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCA 595238 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| || | |||| ||| || || ||||| || || | || |||||| |||||||| Sbjct 595239 GCAAAGATTGATCTTCGCCGGAAAGCAGCTCGAGGATGGACGTACCCTCTCTGACTACAA 595298 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || || |||| Sbjct 595299 TATCCAGAAGGAGTCCACCCTTCACTTAGT 595328 Score = 113 bits (124), Expect = 5e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 40723 ACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTC 40782 |||||||| | || ||||||||| | |||| | | | |||||| || || | Sbjct 595963 ACCATCACTCTTGAAGTCGAAGCCTCGGACACAATCGAGAATGTCAAGGCCAAGATCCAG 596022 Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||||||||| |||||| | |||||||| ||||||||| ||| || || ||||| || Sbjct 596023 GACAAAGAGGGAATCCCCCCAGACCAGCAGAGACTCATCTTCGCTGGAAAGCAGCTCGAG 596082 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | |||||| | |||||||| |||||||||||| | || || ||||| || || Sbjct 596083 GATGGCCGCACCTTGTCTGACTACAATATCCAGAAGGAGTCTACTCTCCATCTTGTTCTG 596142 Query 40903 CG 40904 || Sbjct 596143 CG 596144 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| ||||| ||||| ||||| ||||||||| | || |||||||| | Sbjct 596427 AATGCAGATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAAGTCGAAGCTTC 596486 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||||| || || | ||||||||||| || ||| | ||||| Sbjct 596487 GGACACAATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAGGGAATTCCCCCAGACCA 596546 Query 40809 GCAACGACTCATCTACGCGGG 40829 ||| ||||||||| ||| || Sbjct 596547 GCAGAGACTCATCTTCGCTGG 596567 Score = 87.8 bits (96), Expect = 2e-12 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 40723 ACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCT 40781 || ||||| |||| || || || |||||| | | |||| | |||| || || | Sbjct 595693 ACTATCACTCTCGAGGTTGAGGCTTCCGACACTATTGAGAACG-TGAAGGCTAAGATCCA 595751 Query 40782 CGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGA 40841 || || ||||| || ||| | ||||||||| || | |||| ||| || || ||||| || Sbjct 595752 GGATAAGGAGGGAATTCCCCCAGACCAGCAAAGATTGATCTTCGCCGGAAAGCAGCTCGA 595811 Query 40842 CGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || | || |||||| |||||||| |||||||||||| |||| || || |||| Sbjct 595812 GGATGGACGTACCCTCTCTGACTACAATATCCAGAAGGAGTCCACCCTTCACTTAGT 595868 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 40723 ACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCT 40781 || ||||| |||| || || ||| | |||| | | |||| | |||| || || | Sbjct 595423 ACTATCACTCTCGAGGTTGAGGCCTCGGACACAATCGAGAACG-TGAAGGCTAAGATCCA 595481 Query 40782 CGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGA 40841 || || || || || ||| | || |||||| ||||||||| ||| || || ||||| || Sbjct 595482 GGATAAGGAAGGAATTCCCCCAGATCAGCAAAGACTCATCTTCGCTGGAAAGCAGCTCGA 595541 Query 40842 CGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901 || | |||||| | |||||||| |||||||||||| | || || ||||| || | Sbjct 595542 GGATGGCCGCACCTTGTCTGACTACAATATCCAGAAGGAGTCTACTCTCCATCTTGTTCT 595601 Query 40902 GCG 40904 ||| Sbjct 595602 GCG 595604 Score = 82.4 bits (90), Expect = 8e-11 Identities = 126/177 (71%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 40723 ACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCT 40781 |||||||| |||| || || || |||||| | | |||| | |||| || || | Sbjct 596233 ACCATCACACTCGAGGTTGAGGCTTCCGACACTATTGAGAACG-TGAAGGCTAAGATCCA 596291 Query 40782 CGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGA 40841 || || || || || ||| | || || ||| ||||||||| ||| || || ||| |||| Sbjct 596292 GGATAAGGAAGGAATTCCCCCAGATCAACAAAGACTCATCTTCGCCGGAAAGCAGTTGGA 596351 Query 40842 CGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || | || ||| | ||||||||||||||||||||| | || ||||| || || Sbjct 596352 AGATGGACGTACCTTGTCTGACTACAACATCCAGAAGGAGTCTACCCTGCACCTGGT 596408 >seq109 Length=1818587 Score = 129 bits (142), Expect = 6e-25 Identities = 140/183 (77%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 40723 ACCATCACCGTCGACGTCGAAGCCACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCT 40781 || |||||| | || |||||||| | |||| | | | ||||| |||||| || || | Sbjct 530330 ACTATCACCCTGGAGGTCGAAGCTTCGGACACCATTGAAAACG-TCAAGGCCAAGATCCA 530388 Query 40782 CGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGA 40841 |||||||| ||||| || | || ||||| ||||||||| || ||||| |||||||| Sbjct 530389 GGACAAAGAAGGCATTCCTCCCGATCAGCAGAGACTCATCTTTGCCGGCAAGCAGCTGGA 530448 Query 40842 CGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901 || | |||||||||| ||||||||||||||| |||||| | || || ||||| || | Sbjct 530449 GGATGGTCGCACCCTCAGCGACTACAACATCCAAAAGGAGTCGACTCTCCATCTCGTCCT 530508 Query 40902 GCG 40904 ||| Sbjct 530509 GCG 530511 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||||||||| || || || || || |||| ||||||||| || Sbjct 529760 ATGCAGATCTTCGTGAAAACGCTCACTGGGAAGACGATTACTCTCGAAGTCGAAGCCTCC 529819 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| || ||||| |||| | || || | ||||| || || || || | || || Sbjct 529820 GACACTATTGAAAACG-TCAAAGCTAAGATCCAGGACAAGGAAGGAATTCCTCCCGATCA 529878 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| ||| ||||| ||| |||| || | | || || ||||||||| Sbjct 529879 GCAACGTCTGATCTTCGCAGGCAAGCAGTTGGAAGATGGAAGAACGCTGTCCGACTACAA 529938 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| ||||| | ||||| ||||| || |||| Sbjct 529939 TATCCAAAAGGAATCTACGCTCCATCTCGTCCTGCG 529974 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| || ||||| |||||| |||| ||||| || | Sbjct 529532 ATGCAAATCTTCGTCAAAACTCTCACCGGAAAAACTATCACCCTCGAAGTCGAGGCTTCT 529591 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||||| || || | ||||| || || ||||| | || ||| Sbjct 529592 GACACTATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCCGATCAG 529651 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | || ||||| ||||| || |||| ||||| || | ||| |||||| Sbjct 529652 CAGCGTTTGATTTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACACTGAGCGATTACAAC 529711 Query 40870 ATCCAGAAGGA 40880 ||||||||||| Sbjct 529712 ATCCAGAAGGA 529722 Score = 82.4 bits (90), Expect = 8e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 40723 ACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTC 40782 ||||| || | || |||||||| | |||| | ||| |||||| || || | Sbjct 530060 ACCATTACTCTAGAGGTCGAAGCTTCTGACACTATCGAAAATGTCAAGGCCAAGATCCAA 530119 Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || || ||||| | || ||||| || || || | || ||||| ||||| || Sbjct 530120 GACAAGGAAGGAATCCCTCCCGATCAGCAGCGTCTGATTTTTGCCGGCAAGCAGCTCGAG 530179 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||| ||||| | | ||||||||||||||| |||||| | || || || Sbjct 530180 GACGGTCGCACATTGAGCGACTACAACATCCAAAAGGAGTCTACCCTCCA 530229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217969914160