Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq81 113 3e-20 seq126 109 4e-19 seq109 102 5e-17 >seq81 Length=934076 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| |||||||||||||||| ||| | || ||||| || ||||| ||||| Sbjct 595083 TTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCATCCTCCAATTGTTTGCCGGCGAA 595024 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| | ||||||||| ||| | | ||| ||||| ||||| ||| | || Sbjct 595023 GATGAGTCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGGATCTTGGCCTTGACATT 594964 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | |||||| || | |||||||| ||||| ||||| |||||||| Sbjct 594963 CTCGATTGTGTCCGAGGCTTCGACTTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTCAC 594904 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 594903 GAAGATCTGCAT 594892 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||| || || || | |||| || ||||| |||||||||||||| Sbjct 596928 TCCTCCACGAAGTCGCAGAACAAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGA 596869 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || ||||| || ||||| ||||| ||||| | ||||||||| ||| Sbjct 596868 CAAAGTGCGGCCATCCTCCAATTGTTTGCCGGCGAAGATGAGTCTCTGCTGGTCTGGGGG 596809 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | || ||||| ||||| ||| | | | || | || | | |||||| Sbjct 596808 GATTCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCGATTGTGTCCGAGGCTTCGAC 596749 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || || || || || || ||||||||||| Sbjct 596748 TTCAAGAGTGATGGTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 596701 >seq126 Length=3090016 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || ||||| | || || || || | || ||||| ||||| ||||| ||||| || Sbjct 1375783 TCCTCCTCGCAGACGAAGGACGAGATGGAGTGTGCTTTCCTTCTGGATGTTATAGTCAGA 1375724 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || || | ||||||||| ||||| ||||| ||||||||||| || Sbjct 1375723 GAGAGTACGACCATCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGAGG 1375664 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| |||||| ||| | | | |||| || | | |||||| Sbjct 1375663 AATTCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATCGTGTCCGAAGCTTCGAC 1375604 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||||||||| || | ||| || || ||||||||||| Sbjct 1375603 TTCGAGGGTGATGGTTTTGCCCGTCAAAGTCTTGACGAAGATCTGCAT 1375556 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||| |||| || | |||| || ||||| |||||||||||||| Sbjct 1376324 TCCTCCACGAAGACGCAGGACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 1376265 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGG 34280 || ||| | || || | ||||||||| ||||| || || ||||||||||| | ||| Sbjct 1376264 GAGAGTACGACCATCTTCTAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGCGG 1376205 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCG 34339 | | || |||||||| ||| || ||||| | | | |||| |||| | || Sbjct 1376204 G-ATGCCTTCCTTGTCCTGGATC-TTGGCTTTGACGTTCTCGATCGTGTCGGAAGCCTCC 1376147 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | |||||||| || || || ||||| || || || || ||||| Sbjct 1376146 ACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGACGAAAATTTGCAT 1376097 Score = 93.3 bits (102), Expect = 3e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 34235 TCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTG 34294 || || | ||||||||| ||||| ||||| |||||||| || ||| | | |||||| Sbjct 1375436 TCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGAATTCCTTCCTTG 1375377 Query 34295 TCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354 || ||||| ||| | | | || | ||||| | |||||| || | |||||| Sbjct 1375376 TCCTGGATCTTGGCCTTGACGTTTTCGATGGTATCGGAAGCTTCGACCTCGAGAGTGATG 1375317 Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || || |||||||||||||| || ||||| ||||||||| Sbjct 1375316 GTCTTTCCGGTGAGAGTTTTGACGAAGATTTGCATCGCT 1375278 >seq109 Length=1818587 Score = 102 bits (112), Expect = 5e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | |||| ||| ||||| |||||||| ||| ||| || |||| Sbjct 529743 AGGACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGCTCAGTGTGCGACCGTCC 529684 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| || ||||| | |||||||| ||| || | | |||||||| Sbjct 529683 TCGAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGAGGGATTCCTTCCTTGTCT 529624 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | || | | ||||| || | ||||| ||| Sbjct 529623 TGGATCTTGGCCTTGACATTTTCGATAGTGTCAGAAGCCTCGACTTCGAGGGTGATAGTT 529564 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || |||||||||||||| || ||||| ||||||||| Sbjct 529563 TTTCCGGTGAGAGTTTTGACGAAGATTTGCATCGCT 529528 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||| || || || | ||| ||| || || || |||||||||||| Sbjct 529986 CCTCCGCGAAGTCGCAGGACGAGATGGAGCGTAGATTCCTTTTGGATATTGTAGTCGGAC 529927 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| | | || |||||||||||||||||||| || || || ||||| ||| || Sbjct 529926 AGCGTTCTTCCATCTTCCAACTGCTTGCCTGCGAAGATCAGACGTTGCTGATCGGGAGGA 529867 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| ||| || ||||| | | | || | |||| | |||||| Sbjct 529866 ATTCCTTCCTTGTCCTGGATC-TTAGCTTTGACGTTTTCAATAGTGTCGGAGGCTTCGAC 529808 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || || || ||||| |||||||| ||||||||||| Sbjct 529807 TTCGAGAGTAATCGTCTTCCCAGTGAGCGTTTTCACGAAGATCTGCAT 529760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071247948960