Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq126 143 2e-29 seq109 129 5e-25 >seq126 Length=3090016 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||||||||| || || || |||||| |||| || || | ||| Sbjct 1376097 ATGCAAATTTTCGTCAAGACTCTGACGGGTAAGACCATCACCCTCGAGGTGGAGGCTTCC 1376156 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | || ||||||||||||| | ||||| |||||| Sbjct 1376157 GACACGATCGAGAACGTCAAAGCCAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 1376216 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| ||||| ||| | ||||| | ||| | ||| || ||| Sbjct 1376217 CAGCGTCTTATCTTCGCCGGCAAGCAGCTAGAAGATGGTCGTACTCTCTCCGACTACAAC 1376276 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || ||||||||| |||| || Sbjct 1376277 ATCCAGAAGGAGTCTACTCTTCATTTGGTCCT 1376308 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||| |||| |||||||| |||||| |||| || ||| | || Sbjct 1375556 ATGCAGATCTTCGTCAAGACTTTGACGGGCAAAACCATCACCCTCGAAGTCGAAGCTTCG 1375615 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | |||||||||||| | || || ||||| Sbjct 1375616 GACACGATTGAGAACGTCAAGGCAAAGA-TCCAGGACAAGGAAGGAATTCCTCCGGACCA 1375674 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||| ||||| ||| | ||||| | ||| | || ||||| Sbjct 1375675 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAAGATGGTCGTACTCTCTCTGACTATAA 1375734 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || ||| || || ||||| || ||| | ||| | || || Sbjct 1375735 CATCCAGAAGGAAAGCACACTCCATCTCGTCCTTCGTCTGCGAGGAGG 1375782 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||||| || || || || ||||| |||| || ||| | ||| Sbjct 1375282 ATGCAAATCTTCGTCAAAACTCTCACCGGAAAGACCATCACTCTCGAGGTCGAAGCTTCC 1375341 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||||| ||||| | || |||||||||||| | || || || ||| Sbjct 1375342 GATACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCGGATCAG 1375401 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || ||||| ||||| ||| | ||||| Sbjct 1375402 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAAGA 1375436 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 57961 CGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCT 58020 ||||||||||| | | || || ||||| || ||||| || || ||||| || ||| | Sbjct 2638239 CGTTCGCCGAGCGAGTGATTGCCTTCGCTGCTGTCGAGGGAATCTTCTTCTCCGGCTCAT 2638298 Query 58021 TTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGAC 58069 |||| || || || ||| ||||||| || || || |||||||||||||| Sbjct 2638299 TTGCTGCCATCTTCTGGCTGAAGAAGCGTGGTCTTATGCCCGGCCTGAC 2638347 >seq109 Length=1818587 Score = 129 bits (142), Expect = 5e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411 |||| |||||||| || ||||| ||||| || || || || || ||| |||| || Sbjct 200382 TCATGAAAAGATCAGGGATCCACAGAGCCAGAAAGAGATCACGAGCACGCTCCTCTTCGG 200323 Query 23412 TGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGT 23471 || ||||||||| ||| | | || || || | || || |||||||||||||||| Sbjct 200322 GACCAGTGTTCTTTCTCAGAGAGCAGAATTCAAAGATATCTGCGTGCCACGGCTCGAGGT 200263 Query 23472 AAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGT 23531 | | ||| || || || || | |||||| || ||||| ||||||||||| || || |||| Sbjct 200262 AGATGGCGAAAGCTCCAGGACGCTTATTTCCTCCCTGGTCGACGTAACGAGCAGTATTGT 200203 Query 23532 TGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 |||| || | ||||| || | ||| ||||| || Sbjct 200202 TGTATACCCGGAGCATGGGAATGAGTCCGTTCGA 200169 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||||| || || ||||| |||||| |||| || || | || Sbjct 529532 ATGCAAATCTTCGTCAAAACTCTCACCGGAAAAACTATCACCCTCGAAGTCGAGGCTTCT 529591 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||||| ||||| | || ||||||||||| | || ||||| ||| Sbjct 529592 GACACTATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCCGATCAG 529651 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || || || ||||| ||| | || ||| | || |||||||||| ||| Sbjct 529652 CAGCGTTTGATTTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACACTGAGCGATTACAAC 529711 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || ||||| ||||| || |||| ||| Sbjct 529712 ATCCAGAAGGAATCTACTCTCCACTTGGTCCTT 529744 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| || || || || || || ||||| || |||| || ||| | || Sbjct 529759 CATGCAGATCTTCGTGAAAACGCTCACTGGGAAGACGATTACTCTCGAAGTCGAAGCCTC 529818 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | | |||| |||||| | || |||||||||||| | || ||||| || Sbjct 529819 CGACACTATTGAAAACGTCAAAGCTAAGATCCAGGACAAGGAAGGAATTCCTCCCGATCA 529878 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| ||||| || ||||| ||||| ||||||||||| | || || ||| || || Sbjct 529879 GCAACGTCTGATCTTCGCAGGCAAGCAGTTGGAAGATGGAAGAACGCTGTCCGACTACAA 529938 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| ||||| || || ||||| || || |||| | || |||| Sbjct 529939 TATCCAAAAGGAATCTACGCTCCATCTCGTCCTGCGACTTCGCGGAGGTA 529988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765335732720