Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq109 141 1e-28 seq126 107 2e-18 >seq109 Length=1818587 Score = 141 bits (156), Expect = 1e-28 Identities = 218/311 (70%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248 ||||| || |||||||| || |||||| | ||||||||| |||||||||| |||| Sbjct 200467 TCGAATTCTTCTCCCCAGCAATCGTCCAAACCGGGACATTCACGAGGACACATCAGCGAC 200408 Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63308 || || || | | |||| ||||| || |||||||| ||||| ||||| | ||| Sbjct 200407 CAGTCGGTATCTTGTTCGACTCTCTTCATGAAAAGATCAGGGATCCACAGAGCCAGAAAG 200348 Query 63309 AGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63368 ||||| | | | | || ||| || || |||||| | ||| | ||| | | Sbjct 200347 AGATCACGAGCACGCTCCTCTTCGGGACCAGTGTTCTTTCTCAGAGAGCAGAATTCAAAG 200288 Query 63369 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63428 ||||| | |||||||| || | ||| ||||| | | ||||||| || || ||||||||| Sbjct 200287 ATATCTGCGTGCCACGGCTCGAGGTAGATGGCGAAAGCTCCAGGACGCTTATTTCCTCCC 200228 Query 63429 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63488 || || | ||| | ||| || || || || || | | ||| ||||| | ||||| ||| Sbjct 200227 TGGTCGACGTAACGAGCAGTATTGTTGTATACCCGGAGCATGGGAATGAGTCCGTTCGAT 200168 Query 63489 ATACCATTGGT 63499 | ||||| || Sbjct 200167 GTTCCATTTGT 200157 Score = 95.1 bits (104), Expect = 2e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 62326 TCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAA 62385 |||| || || |||||||||| | |||| | | | | || ||||| ||||| | Sbjct 201414 TCTTCATGTCCTCATTCCATAGTCCGAGCTCGACAAGATCCTTGAGAAGATGTGGGTTTA 201355 Query 62386 CTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCA 62445 | | |||||| ||||| |||| || | ||| |||| || || ||| || || || | Sbjct 201354 CAATTTGGAAGTCTCCCGACAGCACACGACGACTGTATATGTTCGAGGTGTAGGGCTCAA 201295 Query 62446 CCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 62502 ||||| || ||||| | |||||||||||| || ||||| |||||||| |||| || Sbjct 201294 TGGACTCGTTGTTTCCAAGAATTTGAGCAGTCGAGGCAGTGGGCATAGGAGCCATCA 201238 Score = 89.7 bits (98), Expect = 6e-13 Identities = 167/243 (69%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| | ||| || | ||||||||||| || || || || | || | |||||| Sbjct 199913 GTTCCAGAATTGAAAAGAGTAGGAGAAGCATGTGTGAAGAATCTCTCGCTCATCAGATTG 199854 Query 63723 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63781 || || || || || || ||||| | ||| |||||||| || ||||| | ||| | Sbjct 199853 TAGGTTTCGATGGCGCTGTTGATATCTTCCTTG-TGAATTCCGACCGCGACTCTCATCAG 199795 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 ||| || || ||||| || |||| ||||| | |||| | |||||| || | Sbjct 199794 CATCTGTTGGGGTCTCTCTGCAATGAGCTTGTTGGTCTTCAGGAGGTAGGAGCGCTCGAG 199735 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 63901 ||| || || || |||||| |||| || |||||||| ||||| | ||| | || || || Sbjct 199734 AGTCTTGAATCCGAAATAGGTGTAGGAGAAGTCTCGATCGTAGACTATAGCGGAGTTCAG 199675 Query 63902 CTT 63904 || Sbjct 199674 TTT 199672 >seq126 Length=3090016 Score = 107 bits (118), Expect = 2e-18 Identities = 281/438 (64%), Gaps = 42/438 (10%) Strand=Plus/Minus Query 33618 ATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33677 || |||||||| || || || |||||||| || |||||||| || ||||| || ||| Sbjct 2638365 ATCAATTCGTTCGATTGGGTCAGGCCGGGCATAAGACCACGCTTCTTCAGCCAGAAGATG 2638306 Query 33678 GAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCT 33737 | ||| ||||| ||||| ||||||||||| || || ||||| |||||||| | || ||| Sbjct 2638305 GCAGCAAATGAGCCGGAGAAGAAGATTCCCTCGACAGCAGCGAAGGCAATCACTCGCTCG 2638246 Query 33738 CC---ATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 33794 | || | || ||| ||||| ||||||||||||||||||| || | Sbjct 2638245 GCGAACGAAGCCTCGTCGTCGGCAATCCAGCGCAGAGCCCAATCGGCCTTCTTCTTGATG 2638186 Query 33795 CAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt-------------tt---------- 33831 || || | | ||||| || |||||| ||| || Sbjct 2638185 CAGGGAAACTCGAAGATGGCGTTGAAGAGACGGTTCCTGAATGATGAGTTGAGGTAAGAT 2638126 Query 33832 ----------------tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33875 | || | ||| | ||| || ||||| | || ||| Sbjct 2638125 AAGGCGAAATCAAACCTCTCGACAGGATCGCGGATATAGGTTTCGATTAGCTTGCTGTAC 2638066 Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33935 || |||||||||||||| || ||||| || || || |||||||| | | |||||||| Sbjct 2638065 ATCTCCGAATGAATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGAAACGAGCCTCGGAT 2638006 Query 33936 ATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995 ||||| |||||| | | ||||| || | | || || || || ||||||||| ||| Sbjct 2638005 ATCTGGACTTCTTTGGAGAATCGCTCGACAAGGTTCTCGTTGACGATTCCATCAGAGGCG 2637946 Query 33996 GCAAAAAACGCCAATACA 34013 || || || ||||| ||| Sbjct 2637945 GCGAAGAAGGCCAAAACA 2637928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816096310480