Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq109 122 9e-23 >seq109 Length=1818587 Score = 122 bits (134), Expect = 9e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | ||||| || || || ||||| |||||||| Sbjct 529759 GCCACCACGGAGACGAAGGACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGCT 529700 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||||| ||| |||||||| || || ||| | |||| ||| |||||||||||||| Sbjct 529699 CAGTGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGAGG 529640 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | ||| | ||||| | | ||| || Sbjct 529639 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATAGTGTCAGAAGCCTCGAC 529580 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | ||| | || || ||||| | ||||| ||||| |||||||| ||| Sbjct 529579 TTCGAGGGTGATAGTTTTTCCGGTGAGAGTTTTGACGAAGATTTGCATCGCT 529528 Score = 109 bits (120), Expect = 5e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | |||||||| ||||| ||||| || ||||| Sbjct 530254 GCCACCACGGAGACGAAGGACCAAGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGCT 530195 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||||| ||| |||||||| || || ||| | |||||||| |||||||||||||| Sbjct 530194 CAATGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCGGGAGG 530135 Query 139657 TATGCCTTCTTTGTC 139671 || ||||| ||||| Sbjct 530134 GATTCCTTCCTTGTC 530120 Score = 105 bits (116), Expect = 7e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139567 CGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 |||||| || ||||| || || || ||| || || || ||||| | ||| || || Sbjct 529957 CGTAGATTCCTTTTGGATATTGTAGTCGGACAGCGTTCTTCCATCTTCCAACTGCTTGCC 529898 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || ||||||||||||||||||||||||| || ||||| ||||| ||| || ||| Sbjct 529897 TGCGAAGATCAGACGTTGCTGATCGGGAGGAATTCCTTCCTTGTCCTGGATCTTAGCTTT 529838 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | ||| | ||||||| || || || || | || | |||||| || || | ||| Sbjct 529837 GACGTTTTCAATAGTGTCGGAGGCTTCGACTTCGAGAGTAATCGTCTTCCCAGTGAGCGT 529778 Query 139747 TTTTACGAATATTTGCAT 139764 ||| ||||| || ||||| Sbjct 529777 TTTCACGAAGATCTGCAT 529760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062815647200