Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq109 152 7e-32 seq126 93.3 6e-14 >seq109 Length=1818587 Score = 152 bits (168), Expect = 7e-32 Identities = 221/312 (71%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 ||||| || |||||||| |||||| || || |||||||| ||||||||||| |||| Sbjct 200467 TCGAATTCTTCTCCCCAGCAATCGTCCAAACCGGGACATTCACGAGGACACATCAGCGAC 200408 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 79980 || || ||| | | |||| ||||| || |||||||| ||||| ||||| | ||| Sbjct 200407 CAGTCGGTATCTTGTTCGACTCTCTTCATGAAAAGATCAGGGATCCACAGAGCCAGAAAG 200348 Query 79981 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 80040 ||||| | | | | ||| ||| || || |||||| | ||| | ||| | | Sbjct 200347 AGATCACGAGCACGCTCCTCTTCGGGACCAGTGTTCTTTCTCAGAGAGCAGAATTCAAAG 200288 Query 80041 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCC 80100 ||||| | |||||||| || | ||| ||||| | | |||| || || || ||||||||| Sbjct 200287 ATATCTGCGTGCCACGGCTCGAGGTAGATGGCGAAAGCTCCAGGACGCTTATTTCCTCCC 200228 Query 80101 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 80160 || || | ||| | ||| || || || || || | | ||| ||||| | || || ||| Sbjct 200227 TGGTCGACGTAACGAGCAGTATTGTTGTATACCCGGAGCATGGGAATGAGTCCGTTCGAT 200168 Query 80161 GTACCATTGGTC 80172 || ||||| ||| Sbjct 200167 GTTCCATTTGTC 200156 Score = 95.1 bits (104), Expect = 2e-14 Identities = 172/247 (70%), Gaps = 10/247 (4%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| | ||| || | ||||||||||| || || || || | || || |||||| Sbjct 199913 GTTCCAGAATTGAAAAGAGTAGGAGAAGCATGTGTGAAGAATCTCTCGCTCATCAGATTG 199854 Query 80395 TACGTCTCAAT--AGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTA 80452 || || || || |||| | ||| | || ||| |||||||| |||||||| | ||| | Sbjct 199853 TAGGTTTCGATGGCGCTGTTGATATCTTCC-TTG-TGAATTCCGACCGCGACTCTCATCA 199796 Query 80453 ACATGTGCTGAGGTCT---TTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTT 80509 ||| || || ||||| | ||| || |||| || | |||| | ||| || | Sbjct 199795 GCATCTGTTGGGGTCTCTCTGCAATGAGCTTG---TTGGTCTTCAGGAGGTAGGAGCGCT 199739 Query 80510 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 80569 | | ||| || || || |||||| |||| || |||||||| ||||| | ||| | |||| Sbjct 199738 CGAGAGTCTTGAATCCGAAATAGGTGTAGGAGAAGTCTCGATCGTAGACTATAGCGGAGT 199679 Query 80570 TGAGTTT 80576 | ||||| Sbjct 199678 TCAGTTT 199672 >seq126 Length=3090016 Score = 93.3 bits (102), Expect = 6e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 || ||||| |||||||||||||| || ||||| || || || |||||||| | | |||| Sbjct 2638071 CTGTACATCTCCGAATGAATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGAAACGAGCC 2638012 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 |||| ||||| |||||| | | ||||| || | | || || || || ||||| ||| Sbjct 2638011 TCGGATATCTGGACTTCTTTGGAGAATCGCTCGACAAGGTTCTCGTTGACGATTCCATCA 2637952 Query 50368 CTGGCTGCAAAAAACGCCAATACA 50391 ||| || || || ||||| ||| Sbjct 2637951 GAGGCGGCGAAGAAGGCCAAAACA 2637928 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 50001 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 50060 |||||| || || || |||||||| || |||||||| || ||||| || |||| || Sbjct 2638360 TTCGTTCGATTGGGTCAGGCCGGGCATAAGACCACGCTTCTTCAGCCAGAAGATGGCAGC 2638301 Query 50061 AAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAA 50104 |||||| || || ||||||||||| || || || || ||||||| Sbjct 2638300 AAATGAGCCGGAGAAGAAGATTCCCTCGACAGCAGCGAAGGCAA 2638257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718267085133240