Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq109 123 2e-23 seq126 91.5 1e-13 seq81 89.7 4e-13 >seq109 Length=1818587 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | ||||| |||| ||| ||||| || | ||||||||| Sbjct 529759 GCCACCACGGAGACGAAGGACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGCT 529700 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || ||| || |||| || | || ||||||||||||||||| ||||| ||||||| || Sbjct 529699 CAGTGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGAGG 529640 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || |||| | ||||| | | | ||||| ||||||||| Sbjct 529639 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATAGTGTCAGAAGCCTCGAC 529580 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || |||||||||||||| |||||||| || || |||||||| Sbjct 529579 TTCGAGGGTGATAGTTTTTCCGGTGAGAGTTTTGACGAAGATTTGCAT 529532 >seq126 Length=3090016 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | |||||||| | ||| |||||| || | ||||| ||||| Sbjct 1376323 CCTCCACGAAGACGCAGGACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 1376264 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || || | || |||||||| || || | ||||| || || | ||| Sbjct 1376263 AGAGTACGACCATCTTCTAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGCGGG 1376204 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| ||||||| | | | |||||| |||||| || Sbjct 1376203 ATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCGATCGTGTCGGAAGCCTCCACC 1376144 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || || || || ||||| || || |||||||||||| Sbjct 1376143 TCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGACGAAAATTTGCATT 1376096 >seq81 Length=934076 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| |||| | ||||| || | ||| ||||| || | ||||| ||||| Sbjct 595119 GCCACCACGAAGTCGGAGGACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCGGA 595060 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || || | || ||||||||||||||||| || || | || ||| || || | || Sbjct 595059 CAAAGTGCGGCCATCCTCCAATTGTTTGCCGGCGAAGATGAGTCTCTGCTGGTCTGGGGG 595000 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || ||||| || |||| | ||||| | | | |||||| || ||||| Sbjct 594999 AATTCCCTCTTTGTCCTGGATCTTGGCCTTGACATTCTCGATTGTGTCCGAGGCTTCGAC 594940 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || || || || || |||||||| || || |||||| Sbjct 594939 TTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACGAAGATCTGCATT 594891 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| |||| | || | ||||| ||| |||||| || | ||||| |||||| Sbjct 596927 CCTCCACGAAGTCGCAGAACAAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAC 596868 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || ||||||||||||||||| || || | || ||| || || | || Sbjct 596867 AAAGTGCGGCCATCCTCCAATTGTTTGCCGGCGAAGATGAGTCTCTGCTGGTCTGGGGGG 596808 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| | || || | | | |||||| || ||||| Sbjct 596807 ATTCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCGATTGTGTCCGAGGCTTCGACT 596748 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || ||||| || || || || || || || ||||| Sbjct 596747 TCAAGAGTGATGGTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 596701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381368712243078