Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq109 140 4e-28 seq126 89.7 7e-13 >seq109 Length=1818587 Score = 140 bits (154), Expect = 4e-28 Identities = 218/312 (70%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 ||||| || |||||||| || ||| || || ||||||||| |||||||||| ||| Sbjct 200467 TCGAATTCTTCTCCCCAGCAATCGTCCAAACCGGGACATTCACGAGGACACATCAGCGAC 200408 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063 || || ||| | | |||| ||||| || |||||||| ||||| ||||| | ||| Sbjct 200407 CAGTCGGTATCTTGTTCGACTCTCTTCATGAAAAGATCAGGGATCCACAGAGCCAGAAAG 200348 Query 72064 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 72123 ||||| | | | | ||| ||| || || |||||| | ||| | ||| | | Sbjct 200347 AGATCACGAGCACGCTCCTCTTCGGGACCAGTGTTCTTTCTCAGAGAGCAGAATTCAAAG 200288 Query 72124 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCC 72183 ||||| | |||||||| || | ||| ||||| | | |||| || || || ||||||||| Sbjct 200287 ATATCTGCGTGCCACGGCTCGAGGTAGATGGCGAAAGCTCCAGGACGCTTATTTCCTCCC 200228 Query 72184 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 72243 || || | ||| | ||| || || || || || | | ||| ||||| | || || ||| Sbjct 200227 TGGTCGACGTAACGAGCAGTATTGTTGTATACCCGGAGCATGGGAATGAGTCCGTTCGAT 200168 Query 72244 GCACCATTGGTC 72255 | ||||| ||| Sbjct 200167 GTTCCATTTGTC 200156 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 71125 AGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTA 71184 || ||||| || || || | ||| || ||||| |||| || | |||| |||| || || Sbjct 201370 AGAAGATGTGGGTTTACAATTTGGAAGTCTCCCGACAGCACACGACGACTGTATATGTTC 201311 Query 71185 CTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 71244 ||| || || || | ||||| || ||||| | |||||||||||| || ||||| ||| Sbjct 201310 GAGGTGTAGGGCTCAATGGACTCGTTGTTTCCAAGAATTTGAGCAGTCGAGGCAGTGGGC 201251 Query 71245 ATAGGTGCCACCAATAGACTATT 71267 ||||| |||| || ||||| || Sbjct 201250 ATAGGAGCCATCAGCAGACTGTT 201228 Score = 89.7 bits (98), Expect = 7e-13 Identities = 171/247 (69%), Gaps = 10/247 (4%) Strand=Plus/Minus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||||| | ||| || | ||||||||||| || || || || | || || |||||| Sbjct 199913 GTTCCAGAATTGAAAAGAGTAGGAGAAGCATGTGTGAAGAATCTCTCGCTCATCAGATTG 199854 Query 72478 TACGTCTCAAT--AGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTA 72535 || || || || |||| | ||| | || ||| || ||||| |||||||| | ||| | Sbjct 199853 TAGGTTTCGATGGCGCTGTTGATATCTTCC-TTG-TGAATTCCGACCGCGACTCTCATCA 199796 Query 72536 ACATATGCTGAGGTCT---TTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTT 72592 ||| || || ||||| | ||| || |||| || | |||| | |||||| | Sbjct 199795 GCATCTGTTGGGGTCTCTCTGCAATGAGCTTG---TTGGTCTTCAGGAGGTAGGAGCGCT 199739 Query 72593 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAAT 72652 | | ||| || || || |||||| |||| || |||||||| ||||| | ||| | || | Sbjct 199738 CGAGAGTCTTGAATCCGAAATAGGTGTAGGAGAAGTCTCGATCGTAGACTATAGCGGAGT 199679 Query 72653 TGAGTTT 72659 | ||||| Sbjct 199678 TCAGTTT 199672 >seq126 Length=3090016 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 42101 ATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATA 42160 || |||||||| || || || |||||||| || |||||||| || ||||| || || Sbjct 2638365 ATCAATTCGTTCGATTGGGTCAGGCCGGGCATAAGACCACGCTTCTTCAGCCAGAAGATG 2638306 Query 42161 GACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC 42219 | |||||||| || || ||||||||||| || || || || |||||||| | || ||| Sbjct 2638305 GCAGCAAATGAGCCGGAGAAGAAGATTCCCTCGACAGCAGCGAAGGCAATCACTCGCTC 2638247 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 || ||||| || ||||||||||| || ||||| || || || |||||||| | | ||| Sbjct 2638071 CTGTACATCTCCGAATGAATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGAAACGAGCC 2638012 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 |||| | ||| |||||| | | ||||| || | | || ||||| || ||||| ||| Sbjct 2638011 TCGGATATCTGGACTTCTTTGGAGAATCGCTCGACAAGGTTCTCGTTGACGATTCCATCA 2637952 Query 42473 CTGGCTGCAAAAAACGCCAATACA 42496 ||| || || || ||||| ||| Sbjct 2637951 GAGGCGGCGAAGAAGGCCAAAACA 2637928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137597655160