Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22]
191 sequences; 59,468,623 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq109 140 4e-28
seq126 89.7 7e-13
>seq109
Length=1818587
Score = 140 bits (154), Expect = 4e-28
Identities = 218/312 (70%), Gaps = 0/312 (0%)
Strand=Plus/Minus
Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003
||||| || |||||||| || ||| || || ||||||||| |||||||||| |||
Sbjct 200467 TCGAATTCTTCTCCCCAGCAATCGTCCAAACCGGGACATTCACGAGGACACATCAGCGAC 200408
Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063
|| || ||| | | |||| ||||| || |||||||| ||||| ||||| | |||
Sbjct 200407 CAGTCGGTATCTTGTTCGACTCTCTTCATGAAAAGATCAGGGATCCACAGAGCCAGAAAG 200348
Query 72064 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 72123
||||| | | | | ||| ||| || || |||||| | ||| | ||| | |
Sbjct 200347 AGATCACGAGCACGCTCCTCTTCGGGACCAGTGTTCTTTCTCAGAGAGCAGAATTCAAAG 200288
Query 72124 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCC 72183
||||| | |||||||| || | ||| ||||| | | |||| || || || |||||||||
Sbjct 200287 ATATCTGCGTGCCACGGCTCGAGGTAGATGGCGAAAGCTCCAGGACGCTTATTTCCTCCC 200228
Query 72184 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 72243
|| || | ||| | ||| || || || || || | | ||| ||||| | || || |||
Sbjct 200227 TGGTCGACGTAACGAGCAGTATTGTTGTATACCCGGAGCATGGGAATGAGTCCGTTCGAT 200168
Query 72244 GCACCATTGGTC 72255
| ||||| |||
Sbjct 200167 GTTCCATTTGTC 200156
Score = 91.5 bits (100), Expect = 2e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 71125 AGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTA 71184
|| ||||| || || || | ||| || ||||| |||| || | |||| |||| || ||
Sbjct 201370 AGAAGATGTGGGTTTACAATTTGGAAGTCTCCCGACAGCACACGACGACTGTATATGTTC 201311
Query 71185 CTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 71244
||| || || || | ||||| || ||||| | |||||||||||| || ||||| |||
Sbjct 201310 GAGGTGTAGGGCTCAATGGACTCGTTGTTTCCAAGAATTTGAGCAGTCGAGGCAGTGGGC 201251
Query 71245 ATAGGTGCCACCAATAGACTATT 71267
||||| |||| || ||||| ||
Sbjct 201250 ATAGGAGCCATCAGCAGACTGTT 201228
Score = 89.7 bits (98), Expect = 7e-13
Identities = 171/247 (69%), Gaps = 10/247 (4%)
Strand=Plus/Minus
Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477
||||| | ||| || | ||||||||||| || || || || | || || ||||||
Sbjct 199913 GTTCCAGAATTGAAAAGAGTAGGAGAAGCATGTGTGAAGAATCTCTCGCTCATCAGATTG 199854
Query 72478 TACGTCTCAAT--AGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTA 72535
|| || || || |||| | ||| | || ||| || ||||| |||||||| | ||| |
Sbjct 199853 TAGGTTTCGATGGCGCTGTTGATATCTTCC-TTG-TGAATTCCGACCGCGACTCTCATCA 199796
Query 72536 ACATATGCTGAGGTCT---TTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTT 72592
||| || || ||||| | ||| || |||| || | |||| | |||||| |
Sbjct 199795 GCATCTGTTGGGGTCTCTCTGCAATGAGCTTG---TTGGTCTTCAGGAGGTAGGAGCGCT 199739
Query 72593 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAAT 72652
| | ||| || || || |||||| |||| || |||||||| ||||| | ||| | || |
Sbjct 199738 CGAGAGTCTTGAATCCGAAATAGGTGTAGGAGAAGTCTCGATCGTAGACTATAGCGGAGT 199679
Query 72653 TGAGTTT 72659
| |||||
Sbjct 199678 TCAGTTT 199672
>seq126
Length=3090016
Score = 89.7 bits (98), Expect = 7e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 42101 ATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATA 42160
|| |||||||| || || || |||||||| || |||||||| || ||||| || ||
Sbjct 2638365 ATCAATTCGTTCGATTGGGTCAGGCCGGGCATAAGACCACGCTTCTTCAGCCAGAAGATG 2638306
Query 42161 GACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC 42219
| |||||||| || || ||||||||||| || || || || |||||||| | || |||
Sbjct 2638305 GCAGCAAATGAGCCGGAGAAGAAGATTCCCTCGACAGCAGCGAAGGCAATCACTCGCTC 2638247
Score = 84.2 bits (92), Expect = 3e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412
|| ||||| || ||||||||||| || ||||| || || || |||||||| | | |||
Sbjct 2638071 CTGTACATCTCCGAATGAATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGAAACGAGCC 2638012
Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472
|||| | ||| |||||| | | ||||| || | | || ||||| || ||||| |||
Sbjct 2638011 TCGGATATCTGGACTTCTTTGGAGAATCGCTCGACAAGGTTCTCGTTGACGATTCCATCA 2637952
Query 42473 CTGGCTGCAAAAAACGCCAATACA 42496
||| || || || ||||| |||
Sbjct 2637951 GAGGCGGCGAAGAAGGCCAAAACA 2637928
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671137597655160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |