Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq109 113 5e-20 >seq109 Length=1818587 Score = 113 bits (124), Expect = 5e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | || || || | |||||||| || || |||||||||||||| Sbjct 529759 GCCACCACGGAGACGAAGGACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGCT 529700 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || ||||| ||| ||||| || || || ||| | |||| ||| |||||||||||||| Sbjct 529699 CAGTGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGAGG 529640 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| || || || | | ||| | ||||| | | || || Sbjct 529639 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATAGTGTCAGAAGCCTCGAC 529580 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 ||| | || | || || ||||| | ||||| ||||| |||||||| ||| Sbjct 529579 TTCGAGGGTGATAGTTTTTCCGGTGAGAGTTTTGACGAAGATTTGCATCGCT 529528 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||| || | ||| | |||||||| ||||| || ||||| ||| | Sbjct 529986 CCTCCGCGAAGTCGCAGGACGAGATGGAGCGTAGATTCCTTTTGGATATTGTAGTCGGAC 529927 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | || || || || ||||||||||||||||||||||||| Sbjct 529926 AGCGTTCTTCCATCTTCCAACTGCTTGCCTGCGAAGATCAGACGTTGCTGATCGGGAGGA 529867 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || ||| | | ||| | ||||| | || ||| ||| Sbjct 529866 ATTCCTTCCTTGTCCTGGATCTTAGCTTTGACGTTTTCAATAGTGTCGGAGGCTTCGACT 529807 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||| || || | ||||| ||||| || ||||| Sbjct 529806 TCGAGAGTAATCGTCTTCCCAGTGAGCGTTTTCACGAAGATCTGCAT 529760 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | || || || | ||||| || ||||| |||||||| ||||| Sbjct 530254 GCCACCACGGAGACGAAGGACCAAGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGCT 530195 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || ||||| ||| ||||| || || || ||| | |||||||| |||||||||||||| Sbjct 530194 CAATGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCGGGAGG 530135 Query 143077 TATGCCTTCTTTGTC 143091 || ||||| ||||| Sbjct 530134 GATTCCTTCCTTGTC 530120 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||||| || | ||| | || || || ||||| |||||||| ||||| Sbjct 530523 CCTCCACGAAGACGCAGGACGAGATGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGCTG 530464 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || || || || || || ||| |||| || | |||||||||||||| Sbjct 530463 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGATCGGGAGGA 530404 Query 143078 ATGCCTTCTTTGTC 143091 |||||||||||||| Sbjct 530403 ATGCCTTCTTTGTC 530390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507013189503120