Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq126 122 1e-22 seq109 91.5 2e-13 >seq126 Length=3090016 Score = 122 bits (134), Expect = 1e-22 Identities = 290/441 (66%), Gaps = 43/441 (10%) Strand=Plus/Plus Query 125143 TTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACGATTC 125201 ||||||||||||| |||| ||| ||||||||||||||||| || | ||| || |||||| Sbjct 2637930 TTTTGGCCTTCTTCGCCGCCTCTGATGGAATCGTCAACGAGAACCTTGTCGA-GCGATTC 2637988 Query 125202 TCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGATTGA 125260 || |||| | || | |||| ||| | ||| ||||| ||||||||| || || Sbjct 2637989 TCCAAAGAAGTCCAGATATCCGAGG-CTCGTTTCTTCTACGGCTTCCAAATCGCCATCGA 2638047 Query 125261 GAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC------- 125313 |||| | || ||||| |||||| | || || || | || || ||||||| Sbjct 2638048 GAACATTCATTCGGAGATGTACAGCAAGCTAATCGAAACCTATATCCGCGATCCTGTCGA 2638107 Query 125314 ------------CGC-------AACGTAAACACAT-------------GCTCTTTAACGC 125341 ||| || | ||| ||| ||||| ||||| Sbjct 2638108 GAGGTTTGATTTCGCCTTATCTTACCTCAACTCATCATTCAGGAACCGTCTCTTCAACGC 2638167 Query 125342 AATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGA 125401 ||| | | | || | || || ||||| | |||| | || ||||| | || Sbjct 2638168 CATCTTCGAGTTTCCCTGCATCAAGAAGAAGGCCGATTGGGCTCTGCGCTGGATTGCCGA 2638227 Query 125402 CGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTT 125461 |||| || |||||| |||||| || || | || ||||| || || ||||| |||||||| Sbjct 2638228 CGACGAGGCTTCGTTCGCCGAGCGAGTGATTGCCTTCGCTGCTGTCGAGGGAATCTTCTT 2638287 Query 125462 TTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 || || ||||| |||||||| ||||| |||||||| || || |||||||| ||||| Sbjct 2638288 CTCCGGCTCATTTGCTGCCATCTTCTGGCTGAAGAAGCGTGGTCTTATGCCCGGCCTGAC 2638347 Query 125522 GCACAGTAACGAGTTTATATC 125542 || ||||| || || || Sbjct 2638348 CCAATCGAACGAATTGATCTC 2638368 Score = 95.1 bits (104), Expect = 2e-14 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 125664 CAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATG 125723 || |||| || ||||| || || || | |||||| || |||||||| || ||| Sbjct 2638600 CAGGAGTACCTGACCGAGTCACTGCCCTGCGACATGATCGGAATGAACTGTCGTCTTATG 2638659 Query 125724 TGCG-AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCG---CAA 125779 ||| |||| || || || || || || | ||| || |||| | |||| | ||| Sbjct 2638660 -GCGCAGTATATTGAATTCGTCGCGGACCATCTTCTCGTCGAGCT---TGGCTGTGACAA 2638715 Query 125780 GATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGAC 125839 | | |||||||||||||| ||||| || |||||| | ||| || | || || ||||| Sbjct 2638716 GCTCTACAACGCCAAGAACCCCTTCGACTTCATGGAAAACATCTCCATCGACGGAAAGAC 2638775 Query 125840 CAACTTTTTCGAGAAGAAGGTCAGCGAGTACAAACG 125875 |||||||||||||| || ||| |||||| |||| Sbjct 2638776 GAACTTTTTCGAGAAAAAAGTCTCCGAGTATCAACG 2638811 >seq109 Length=1818587 Score = 91.5 bits (100), Expect = 2e-13 Identities = 246/372 (66%), Gaps = 16/372 (4%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| || ||||| || || || ||| | ||| ||||| | || || |||||||| || Sbjct 200226 CAGGGAGGAAATAAGCGTCCTGGAGCTTTCGCCATCTACCTCGAGCCGTGGCACGCAGAT 200285 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 | ||||| || | || | || ||| |||| ||||||| || || | || Sbjct 200286 ATCTTTGAATTCTGCTCTCTGAGAAAGAACACTGGTCCCGAAGAGGAGCGTGCTCGTGAT 200345 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | ||| || || ||| | || ||| | ||||||||| | ||| | | | | | || Sbjct 200346 CTCTTTCTGGCTCTGTGGATCCCTGATCTTTTCATGAAGAGAGTCGAACAAGATACCGAC 200405 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCA----CCCGGTCTGTCCGATTGCTGGGGCGAAGA 97111 ||| || ||||| || |||| | |||||| || |||||||||||| ||||| Sbjct 200406 TGGTCGCTGATGTGTCC----TCGTGAATGTCCCGGTTTGGACGATTGCTGGGGAGAAGA 200461 Query 97112 GTTTGAGGCCAAG---TACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCG 97167 || ||| ||| ||||| |||||| || || || | ||| || | ||| Sbjct 200462 ATTCGAG---AAGCTTTACACTAAGTACGAGTCCGAAGGACGCTTCCGTAAG-CAGGTCA 200517 Query 97168 ATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACA 97227 | || || | || ||| || | | || || | ||| | ||||||||| |||||||| Sbjct 200518 AGGCGCGTAAGCTCTGGGAGCACGTGGTTTCGTCCCAGATCGAGACTGGACTTCCGTACA 200577 Query 97228 TTCTCTACAAGG 97239 || | ||||||| Sbjct 200578 TTGTATACAAGG 200589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057430721160