Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq109 98.7 7e-16 seq126 89.7 4e-13 >seq109 Length=1818587 Score = 98.7 bits (108), Expect = 7e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || || || || || || |||||||||||||| || | | |||| || Sbjct 529740 ACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGCTCAGTGTGCGACCGTCCTCG 529681 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| || | |||||||| || || ||| || |||||||| ||||| Sbjct 529680 AGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGAGGGATTCCTTCCTTGTCTTGG 529621 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| |||| || || || | || || || | ||| || ||||| Sbjct 529620 ATCTTGGCCTTGACATTTTCGATAGTGTCAGAAGCCTCGACTTCGAGGGTGATAGTTTTT 529561 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAAT 15373 || || |||||||| || || |||||||| ||||||| Sbjct 529560 CCGGTGAGAGTTTTGACGAAGATTTGCATCGCTGAAAAT 529522 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || || ||||| || ||||| ||| || |||| | ||||| || || Sbjct 529963 ATGGAGCGTAGATTCCTTTTGGATATTGTAGTCGGACAGCGTTCTTCCATCTTCCAACTG 529904 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 ||||| ||| | |||| |||||| || ||| ||||||||||| ||||| || || Sbjct 529903 CTTGCCTGCGAAGATCAGACGTTGCTGATCGGGAGGAATTCCTTCCTTGTCCTGGATCTT 529844 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| || || |||| || || ||| ||| || || | ||||| || || || | Sbjct 529843 AGCT-TTGACGTTTTCAATAGTGTCGGAGGCTTCGACTTCGAGAGTAATCGTCTTCCCAG 529785 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 | || ||||| || || || ||||| Sbjct 529784 TGAGCGTTTTCACGAAGATCTGCAT 529760 >seq126 Length=3090016 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||| || || || || || |||||||| ||| ||| | | | |||||| Sbjct 1376305 ACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCATCTTCT 1376246 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| ||| | || | ||| || ||||| || || ||||| ||||| Sbjct 1376245 AGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGG 1376186 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| || || | || || || ||| | || || || | ||| ||||| ||| Sbjct 1376185 ATCTTGGCTTTGACGTTCTCGATCGTGTCGGAAGCCTCCACCTCGAGGGTGATGGTCTTA 1376126 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||||||| || || ||||||||||| Sbjct 1376125 CCCGTCAGAGTCTTGACGAAAATTTGCAT 1376097 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | ||||| | || ||||| ||| | || | ||| || || || ||| Sbjct 1375448 AGAGTTCTGCCATCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGA 1375389 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| || ||| ||| || |||| ||||||||| | ||| || Sbjct 1375388 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATGGTATCGGAAGCTTCGACC 1375329 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAA 15372 || | || ||||| || || || |||||||| || || |||||||| |||||| Sbjct 1375328 TCGAGAGTGATGGTCTTTCCGGTGAGAGTTTTGACGAAGATTTGCATCGCTGAAAA 1375273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362178356914731