Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq126 127 5e-24 seq81 125 2e-23 seq76 87.8 4e-12 >seq126 Length=3090016 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| || | ||| || ||||| | ||| ||| ||||| || ||||||||| Sbjct 1375785 ATTCCTCCTCGCAGACGAAGGACGAGATGGAGTGTGCTTTCCTTCTGGATGTTATAGTCA 1375726 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||| ||||| || || || || || || || || | ||| || || ||| Sbjct 1375725 GAGAGAGTACGACCATCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGA 1375666 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || ||||| |||||||| || || || || | || || || ||| Sbjct 1375665 GGAATTCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATCGTGTCCGAAGCTTCG 1375606 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || || || | || || || || |||||||| Sbjct 1375605 ACTTCGAGGGTGATGGTTTTGCCCGTCAAAGTCTTGACGAAGATCTGCAT 1375556 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104388 CAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAG 104447 |||| || || || || || || || ||||| || || || || || | || || |||| Sbjct 1375998 CAGAAAGGGTCCTGCCATCCTCGAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCAG 1375939 Query 104448 GAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTT 104507 | || || ||||| |||||||||||||| || || || || || | || ||||| | | Sbjct 1375938 GCGGGATACCTTCCTTATCCTGAATCTTGGCCTTGACGTTCTCAATTGTGTCGCTGGCCT 1375879 Query 104508 CTACCTCTAGTGTAATAGTCT 104528 | || ||||| || ||||||| Sbjct 1375878 CGACTTCTAGAGTGATAGTCT 1375858 >seq81 Length=934076 Score = 125 bits (138), Expect = 2e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || ||||| | ||||| || |||||||| || ||||| Sbjct 596930 ATTCCTCCACGAAGTCGCAGAACAAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCG 596871 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||| | || || || | |||||| || || || || || ||||| || || || Sbjct 596870 GACAAAGTGCGGCCATCCTCCAATTGTTTGCCGGCGAAGATGAGTCTCTGCTGGTCTGGG 596811 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTC 104508 || ||||||||||| ||||| ||||| || || || || || | || || | ||| ||| Sbjct 596810 GGGATTCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCGATTGTGTC-CGAGGCTTC 596752 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| |||||||| || || || || |||||||| Sbjct 596751 GACTTCAAGAGTGATGGTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 596701 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| ||||| |||||||| || || | || || || || || ||||| Sbjct 595316 GTGGACTCCTTCTGGATATTGTAGTCAGAGAGGGTACGTCCATCCTCGAGCTGCTTTCCG 595257 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | || || || || || || ||||| || || ||||| ||||||||||| Sbjct 595256 GCGAAGATCAATCTTTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTTGCTTTG 595197 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| || || || || ||||| || ||||| || || | || Sbjct 595196 ACGTTCTCGATGGTATCAGAAGCCTCGACTTCAAGTGTGATGGTCTTTCCCGTCAAAGTC 595137 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 595136 TTGACGAAGATCTGCAT 595120 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||| || || || ||||| ||||| ||||| ||||| || || ||||| ||||||||| Sbjct 594759 CCAGCGAAGATAAGTCTCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGGATCTTTGCT 594700 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || || || | |||||| || || ||||| || || || |||||||| || || Sbjct 594699 TTGACGTTCTCGATGGTATCAGAAGCCTCGACCTCAAGGGTGATGGTCTTACCGGTTAGG 594640 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| Sbjct 594639 GTTTTGACGAAGATTTGCAT 594620 >seq76 Length=529262 Score = 87.8 bits (96), Expect = 4e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 ||| || ||||| || ||||| || |||||||| ||||| || || ||||| || | ||| Sbjct 255886 CTGCTGGTCAGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGT 255945 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||| | || ||||| || || ||||||||||| || || || || || || ||||| Sbjct 255946 ATCAGAGGCCTCGACCTCGAGGGTGATAGTCTTACCGGTCAGAGTCTTCACGAAGATCTG 256005 Query 104557 CAT 104559 ||| Sbjct 256006 CAT 256008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151395582312228