Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq109 141 8e-29 seq81 141 8e-29 seq126 87.8 2e-12 >seq109 Length=1818587 Score = 141 bits (156), Expect = 8e-29 Identities = 159/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | |||||||||||| || | ||| ||||||||| ||||| || |||| Sbjct 529740 ACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGCTC--AGTGTGCGACCGTCCT 529683 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | ||||| || ||| |||| || || | |||||||| ||||| || ||||| ||||| | Sbjct 529682 CGAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGAGGGATTCCTTCCTTGTCTT 529623 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || |||||||| ||| |||||||| ||||| || | ||||| |||| Sbjct 529622 GGATCTTGGCCTTGACATTTTCGATAGTGTCAGAAGCCTCGACTTCGAGGGTGATAGTTT 529563 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || |||||||| || ||||| ||||| Sbjct 529562 TTCCGGTGAGAGTTTTGACGAAGATTTGCAT 529532 Score = 107 bits (118), Expect = 2e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||| | | ||||| || | || | |||||||||||||| | || | Sbjct 529994 TTTGCATACCTCCGCGAAGTCGCAGGACGAGATGGAGCGTAGATTCCTTTTGGATATTGT 529935 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||| || || | ||| |||| ||| || || | ||||| | | |||||||| Sbjct 529934 AGTCGGACAGCGTTCTTCCATCTTCCAACTGCTTGCCTGCGAAGATCAGACGTTGCTGAT 529875 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | |||||||| ||||| ||||| | || || || |||||| | | |||||| | | Sbjct 529874 CGGGAGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTGACGTTTTCAATAGTGTCGGAGG 529815 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| || | || || || || ||||| || |||||||| ||||||||||||| Sbjct 529814 CTTCGACTTCGAGAGTAATCGTCTTCCCAGTGAGCGTTTTCACGAAGATCTGCATGC 529758 Score = 102 bits (112), Expect = 7e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCC 94869 ||| || |||||||| | ||| || ||||| | ||| |||||||||||| || || Sbjct 530494 AGTCGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCCAGCTGCTTGCC 530435 Query 94870 GCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTT 94929 | ||||||| | ||| |||||||| |||||||| ||||||||||| | || || ||||| Sbjct 530434 GGCAAAGATGAGTCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCCTT 530375 Query 94930 GACG 94933 |||| Sbjct 530374 GACG 530371 >seq81 Length=934076 Score = 141 bits (156), Expect = 8e-29 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || |||||| | | ||||| || | || | |||||| ||||| || | ||| || || Sbjct 596931 CATTCCTCCACGAAGTCGCAGAACAAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTC 596872 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | || |||| | |||||||| ||||| ||| | ||||| | ||| ||||| ||||| Sbjct 596871 GGACAAAGTGCGGCCATCCTCCAATTGTTTGCCGGCGAAGATGAGTCTCTGCTGGTCTGG 596812 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 || || ||||||||||| | || || ||||| ||| ||| ||||| | | || Sbjct 596811 GGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCGATTGTGTCCGAGGCTTC 596752 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| |||| |||||||| ||||||||||| || || || ||||||||||||| Sbjct 596751 GACTTCAAGAGTGATGGTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCATGC 596699 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || |||||||| || | ||| || ||| || |||| | ||||||| Sbjct 595100 ACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCATCCTCC 595041 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||||| ||| | ||||| | ||| ||||| ||||| ||||| || |||||||| | Sbjct 595040 AATTGTTTGCCGGCGAAGATGAGTCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGG 594981 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || |||||||| ||| ||||| | | ||||| |||| |||||||| || Sbjct 594980 ATCTTGGCCTTGACATTCTCGATTGTGTCCGAGGCTTCGACTTCAAGGGTGATGGTCTTG 594921 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || |||||||| ||||||||||| Sbjct 594920 CCAGTGAGGGTTTTCACGAAGATCTGCAT 594892 Score = 118 bits (130), Expect = 1e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| ||||| |||||| | ||||| ||||||||||| ||||| ||||| || || || Sbjct 595275 ATCCTCGAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGGGGAATTCCCTCCTT 595216 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || ||||| |||||| ||| || |||| ||||| |||| ||||| Sbjct 595215 GTCCTGGATCTTTGCTTTGACGTTCTCGATGGTATCAGAAGCCTCGACTTCAAGTGTGAT 595156 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| ||||| || | ||| || || ||||||||||||| Sbjct 595155 GGTCTTTCCCGTCAAAGTCTTGACGAAGATCTGCATGC 595118 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||| | ||| ||||| ||||| ||||| || |||||||| | || || |||||||| Sbjct 596561 AAGATGAGTCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGGATCTTGGCCTTGACA 596502 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 ||| ||||| | ||||| |||| |||||||| || ||||| || |||||| Sbjct 596501 TTCTCGATTGTGTCCGAAGCTTCGACTTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTC 596442 Query 94994 ACAAAGATCTGCAT 95007 || ||||||||||| Sbjct 596441 ACGAAGATCTGCAT 596428 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||| | ||| ||||||||||||||||| || || ||||| | || ||||| |||||| Sbjct 594753 AAGATAAGTCTCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGGATCTTTGCTTTGACG 594694 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 ||| || |||| ||||| |||| |||||||| || || || || ||||| Sbjct 594693 TTCTCGATGGTATCAGAAGCCTCGACCTCAAGGGTGATGGTCTTACCGGTTAGGGTTTTG 594634 Query 94994 ACAAAGATCTGCAT 95007 || ||||| ||||| Sbjct 594633 ACGAAGATTTGCAT 594620 >seq126 Length=3090016 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || ||||| || ||| | ||||| | | ||||| || |||||||| ||||| || Sbjct 1375711 ATCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGAATTCCTTCCTT 1375652 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || |||||||||||| | | ||||| | ||||| || | ||||| Sbjct 1375651 GTCCTGGATCTTTGCCTTGACGTTCTCAATCGTGTCCGAAGCTTCGACTTCGAGGGTGAT 1375592 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| || || | ||| || || ||||||||||| Sbjct 1375591 GGTTTTGCCCGTCAAAGTCTTGACGAAGATCTGCAT 1375556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290129704760